SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69896

Length: 154 nt

UniGene Fasta

>sp_v3.0_unigene69896
CGTCGTGACCTTGGCTGTCACTCAAGGTCTCAATGTTTACAGTATTTTACAACATGATACACTAGTGATGACAGTAGATGCAGTGAATCGAATTGTGGAGCGGATGCACACTCCAATTAATCGCTGAGAGAAATAATGTCAGTTGTGGATACAA

Ace file of the UniGene sp_v3.0_unigene69896

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L4/L1 family protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QQM8_ORYSJ	-	-	7.0e-10	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	50S ribosomal protein L4	-	-	3.818e-08	-

Source	Gene names
Sma3	At2g20060; LOC_Os11g37510; LOC_Os12g30490; Os11g0585700; Os12g0488600; OsI_36619; OsI_38360; OsJ_34399; OsJ_36122; PHYPADRAFT_191233; POPTRDRAFT_786295; RCOM_0903300; VITISV_027648;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L4/L1e	IPR002136	-	-
Sma3	Ribosomal protein L4/L1e, bacterial-type	IPR013005	-	-
Sma3		IPR015498	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G20060.1	Ribosomal protein L4/L1 family chr2:8659384-8661227 FORWARD LENGTH=300	1.0e-12	72%
RefSeq	Arabidopsis thaliana	NP_565463.1	large subunit ribosomal protein L4 [Arabidopsis thaliana]	2.0e-12	72%
RefSeq	Populus trichocarpa	XP_002331557.1	predicted protein [Populus trichocarpa]	2.0e-13	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABZ3

Fln msg: your sequence is shorter than subject: 42 - 323

Fln protein: VVTLAVTQGLNVYSILQHDTLVMTVDAVNRIVERMHTPINR*

Protein Length: 43

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGTCTCAATGTTTACAGTATTTTACAACATGATACACTAGTGATGACAGTAGATGCAGTGAATCGAATTGTGGAGCGGATGCACACTCCAATTAATCGCTGA___GAGAAATAATGTCAGTTGTGGATACAA

Fln Alignment:

GG46A6U02GV9QI___GLNVYSILQHDTLVMTVDAVNRIVERMHTPINR
D5ABZ3_______________GLNVYSILQHDTLVMTADAVNRIVERMHTPINR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain