SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69877

Length: 377 nt

UniGene Fasta

>sp_v3.0_unigene69877
CGTCGTGACCTTGGCTGTCACTCAGTTTGGTTTTGGAGTCCCAGGACATCCTCTGGGACAATGTCAGAGACAGCTCAATGAGTTTGCCCAAGGGCCTCCGTACTTTTACTTTGAGAATGTTGCCATTGCACCAAAGGGTGTCTGGGCAACTGTATCTCGATTTCTATATGATATTGACCCTGAATTTGTAGATTCTAAGTATTTTTCTGTTTCAAGCAGAAAACGAGGCTATGTGCATAACCTCCCGATTGAGAATCGATATCAGATTTCTCCTTTGCCATCAATGACAATACAAGAGGCATTTCCTGATATGCAAAAAGTATTGGCCTTCTTGGGATTACAGGACAAAGCTTAATTGCATAAATACTGCGGTTCGC

Ace file of the UniGene sp_v3.0_unigene69877

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA methyltransferase [Nicotiana tabacum]	-	-	3.0e-37	60%
FL-Next	sp=DNA (cytosine-5)-methyltransferase DRM2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Sma3	Putative DNA cytosine methyltransferase Zmet3	-	-	3.982e-08	-

Source	Gene names
Sma3	At5g14620; DMT905; DRM2; DRM5; F8M21_270; GSVIVT00020712001; LOC_Os03g02010; LOC_Os11g01810; LOC_Os12g01800; NtDRM1; OSJNBb0043C10.1; Os03g0110800; Os12g0108900; OsI_09692; OsI_27322; OsI_34820; OsJ_09131; OsJ_32669; PHYPADRAFT_133529; PHYPADRAFT_148057;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA (cytosine-5-)-methyltransferase activity	GO:0003886	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3	methylation-dependent chromatin silencing	GO:0006346	Biological Process	-
Sma3	histone H3-K9 methylation	GO:0051567	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Stress responsive alpha-beta barrel	IPR013097	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G14620.1	DRM2, DMT7 domains rearranged methyltransferase 2 chr5:4715429-4718578 REVERSE LENGTH=626	2.0e-37	60%
RefSeq	Arabidopsis thaliana	NP_196966.2	DNA (cytosine-5)-methyltransferase DRM2 [Arabidopsis thaliana]	2.0e-37	60%
RefSeq	Populus trichocarpa	XP_002300046.1	DNA methyltransferase [Populus trichocarpa]	2.0e-38	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M548

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 227 aas, your sequence is shorter than subject: 118 - 626

Fln protein: VVTLAVTQFGFGVPGHPLGQCQRQLNEFAQGPPYFYFENVAIAPKGVWATVSRFLYDIDPEFVDSKYFSVSSRKRGYVHNLPIENRYQISPLPSMTIQEAFPDMQKVLAFLGLQDKA*

Protein Length: 119

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTGGTTTTGGAGTCCCAGGACATCCTCTGGGACAATGTCAGAGACAGCTCAATGAGTTTGCCCAAGGGCCTCCGTACTTTTACTTTGAGAATGTTGCCATTGCACCAAAGGGTGTCTGGGCAACTGTATCTCGATTTCTATATGATATTGACCCTGAATTTGTAGATTCTAAGTATTTTTCTGTTTCAAGCAGAAAACGAGGCTATGTGCATAACCTCCCGATTGAGAATCGATATCAGATTTCTCCTTTGCCATCAATGACAATACAAGAGGCATTTCCTGATATGCAAAAAGTATTGGCCTTCTTGGGATTACAGGACAAAGCTTAATTGCATAAATACTGCGGTTCGC

Fln Alignment:

GG46A6U02IQKO9___VTLAVTQFGFGVPGHPLGQCQRQLNEFAQGPPYFYFENVAIAPKGVWATVSRFLYDIDPEFVDSKYFSVSSRKRGYVHNLPIENRYQISPLPSMTIQEAFP
Q9M548_______________IRLPNPMIGFGVPNEPGLITHRSLPELARGPPFFYYENVALTPKGVWETISRHLFEIPPEFVDSKYFCVAARKRGYIHNLPINNRFQIQPPPKYTIHDAFP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain