SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69857

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene69857
CGTCGTGACCTTGGCTGTCACTCATTCTCTGATCCAGTTATTGCTGTTCGGGAAGCTGCTGAGTGTTCTGCTCGTGCTATGATGTCTCATTTGAGTGGACAAGGGGTGAAGCTTGTTCTCCCATTCCTTGCTTCAGGGTTTGGAGGATAAAGCTTGGAGGACTAAACAGGGGAGTGTACCAGCTACTGGGAGCAATGGCTTACTGTGCACCTCAACTAGCTATCTCAATGTCTT

Ace file of the UniGene sp_v3.0_unigene69857

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HEAT repeat, putative n=4 Tax=Oryza sativa Japonica Group RepID=Q53K35_ORYSJ	-	-	5.0e-11	74%
FL-Next	tr=Translational activator GCN1; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	79%

Source	Gene names
Sma3	B1377B10.19; F13O11.10; GSVIVT00026717001; LOC_Os03g51140; Os03g0721200; OsI_13323; OsJ_12383; PHYPADRAFT_159348; POPTRDRAFT_248278; RCOM_0610410;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Plant self-incompatibility S1	IPR010264	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G64790.2	ILA ILITYHIA chr1:24065232-24083403 REVERSE LENGTH=2696	3.0e-12	76%
RefSeq	Arabidopsis thaliana	NP_001185313.1	protein ILITYHIA [Arabidopsis thaliana]	4.0e-12	76%
RefSeq	Populus trichocarpa	XP_002325795.1	predicted protein, partial [Populus trichocarpa]	3.0e-11	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: G7L2Y0

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 1195 aas, your sequence is shorter than subject: 78 - 2751

Fln protein: RRDLGCHSFSDPVIAVREAAECSARAMMSHLSGQGVKLVLPFLAxxxWRIKLGGLNRGVYQLLGAMAYCAPQLAISMS

Protein Length: 79

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTCTGATCCAGTTATTGCTGTTCGGGAAGCTGCTGAGTGTTCTGCTCGTGCTATGATGTCTCATTTGAGTGGACAAGGGGTGAAGCTTGTTCTCCCATTCCTTGCTxxxxxxxxxTGGAGGATAAAGCTTGGAGGACTAAACAGGGGAGTGTACCAGCTACTGGGAGCAATGGCTTACTGTGCACCTCAACTAGCTATCTCAATGTCTT

Fln Alignment:

GG46A6U02G8CQB___SFSDPVIAVREAAECSARAMMSHLSGQGVKLVLPFLASGxxxRVWRIKLGGLNRGVYQLLGAMAYCAPQ
G7L2Y0_______________SFSDQVAAVREAAECAARAMMSQLSAQGVKLVLPSLLKGxxxKAWRTKQSSV-----QLLGAMAYCAPQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain