SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69834

Length: 212 nt

UniGene Fasta

>sp_v3.0_unigene69834
CGTCGTGACCTTGGCTGTCACTCAATTTGGGTCCTTTGCTCTGCTGCTAATTTTTGTCTTAGGAGGATTTGTCATTTCTAAAGATGCTGTCCGTCCATGGTGGATTTGGGGATACTGGGCTTCTCCTATGATGTATGGCCAGAATGCTATAGCCATCAATGAATATCTAGACAAGCGTTGGAGCCTCGCCCAACAATGACTCCCAACATAGA

Ace file of the UniGene sp_v3.0_unigene69834

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PDR-like ABC transporter [Oryza sativa Japonica Group]	-	-	2.0e-17	62%
FL-Next	sp=Pleiotropic drug resistance protein 2; Nicotiana plumbaginifolia (Leadwort-leaved tobacco) (Tex-Mex tobacco).	-	-	0.0	69%
Sma3	ATP-binding cassette transporter, putative	-	-	1.028e-30	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	5.386e-26	-
Sma3	Polyamine-transporting ATPase.	EC:3.6.3.31	-	3.148e-06	-

Source	Gene names
Sma3	At1g66950; At2g36380; F1O11.1; F1O19.3; GSVIVT00021655001; GSVIVT00022041001; GSVIVT00022062001; GSVIVT00022064001; GSVIVT00022066001; GSVIVT00032575001; GSVIVT00032579001; GSVIVT00032581001; GSVIVT00034498001; GSVIVT00034502001; GSVIVT00034509001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G26910.1	PDR4, ATPDR4 pleiotropic drug resistance 4 chr2:11481623-11487874 FORWARD LENGTH=1420	3.0e-20	54%
RefSeq	Arabidopsis thaliana	NP_180259.1	ABC transporter G family member 32 [Arabidopsis thaliana]	4.0e-20	54%
RefSeq	Populus trichocarpa	XP_002304714.1	predicted protein [Populus trichocarpa]	7.0e-24	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q2PCF1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 710 aas, your sequence is shorter than subject: 66 - 1461

Fln protein: VVTLAVTQFGSFALLLIFVLGGFVISKDAVRPWWIWGYWASPMMYGQNAIAINEYLDKRWSLAQQ*

Protein Length: 67

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGGGTCCTTTGCTCTGCTGCTAATTTTTGTCTTAGGAGGATTTGTCATTTCTAAAGATGCTGTCCGTCCATGGTGGATTTGGGGATACTGGGCTTCTCCTATGATGTATGGCCAGAATGCTATAGCCATCAATGAATATCTAGACAAGCGTTGGAGCCTCGCCCAACAATGACTCCCAACATAGA

Fln Alignment:

GG46A6U01C8F84___GSFALLLIFVLGGFVISKDAVRPWWIWGYWASPMMYGQNAIAINEYLDKRWS
Q2PCF1_______________GTFTLLMVFILGGFIVSKDDIQDWMIWGYYLSPMMYGQNAIAINEFLDDRWS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain