SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69818

Length: 247 nt

UniGene Fasta

>sp_v3.0_unigene69818
CGTCGTGACCTTGGCTGTCACTCATCAGTTCATCGTCATTCCCCAATTCTACGCAGTCATCAGGGAAGCAGGAGACGAAGGGTTGGAGTGGATAACGTTCACAACCTCAGACCTTTCTTTGCGCTCGACTCTGGCAGGAAGGCAATCGGTTTTGAAGGCAATGCCAGAGGAAGTGTTGAGAGCCGNTTACAGGATCGACCAAATGAAGTTCAACAAGTGATGAGGAACAGAGAACGCGACACCTTCA

Ace file of the UniGene sp_v3.0_unigene69818

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Legumin-like storage protein n=1 Tax=Picea glauca RepID=Q40870_PICGL	-	-	5.0e-22	81%
FL-Next	tr=Legumin-like storage protein; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	81%
Sma3	Legumin	-	-	1.311e-17	-

Source	Gene names
Sma3	Leg18; Leg2; Leg26; Leg3; Leg31;

Source	GOs	Term	Type	e value	Identity
Sma3	nutrient reservoir activity	GO:0045735	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	11-S seed storage protein, plant	IPR006044	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G03890.1	RmlC-like cupins superfamily protein chr1:989250-990908 FORWARD LENGTH=451	7.0e-12	45%
RefSeq	Arabidopsis thaliana	NP_171885.1	RmlC-like cupin [Arabidopsis thaliana]	9.0e-12	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q40870

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 25 aas, your sequence is shorter than subject: 73 - 509

Fln protein: VVTLAVTHQFIVIPQFYAVIREAGDEGLEWITFTTSDLSLRSTLAGRQSVLKAMPEEVLRADYRIDQMKFNK*

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCAGTTCATCGTCATTCCCCAATTCTACGCAGTCATCAGGGAAGCAGGAGACGAAGGGTTGGAGTGGATAACGTTCACAACCTCAGACCTTTCTTTGCGCTCGACTCTGGCAGGAAGGCAATCGGTTTTGAAGGCAATGCCAGAGGAAGTGTTGAGAGCCGaTTACAGGATCGACCAAATGAAGTTCAACAAGTGATGAGGAACAGAGAACGCGACACCTTCA

Fln Alignment:

GG46A6U01B6FOJ___QFIVIPQFYAVIREAGDEGLEWITFTTSDLSLRSTLAGRQSVLKAMPEEVLRADYRIDQ
Q40870_______________QFIVIPQFYAVIKQAGDEGFEWITFTTSDISFQSFLAGRQSVLKAMPEEVLSAAYRMDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain