SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69753

Length: 117 nt

UniGene Fasta

>sp_v3.0_unigene69753
CGTCGTGACCTTGGCTGTCACTCAAGGGTAGTAATCCGGGCGATGAAAAACTTTATAAAGGTATTCACGGTTATACCGATCACAAAGCAGGTTTTAGAAGAGAACACACAGTTTCCG

Ace file of the UniGene sp_v3.0_unigene69753

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative zinc finger protein [Arabidopsis thaliana]	-	-	8.0e-07	74%
FL-Next	sp=Zinc finger CCCH domain-containing protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	74%
Sma3	RING finger protein 113A, putative	-	-	1.082e-09	-

Source	Gene names
Sma3	At1g01350; At5g06420; MHF15.6; POPTRDRAFT_731318; RCOM_0693420; RCOM_0694470; VITISV_014667;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR013084	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G01350.1	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein chr1:136732-137970 FORWARD LENGTH=343	5.0e-11	74%
RefSeq	Arabidopsis thaliana	NP_171642.2	zinc finger CCCH domain-containing protein 1 [Arabidopsis thaliana]	6.0e-11	74%
RefSeq	Populus trichocarpa	XP_002320858.1	predicted protein [Populus trichocarpa]	7.0e-12	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GX84

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 167 aas, your sequence is shorter than subject: 38 - 343

Fln protein: S*PWLSLKGSNPGDEKLYKGIHGYTDHKAGFRREHTVS

Protein Length: 39

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGGTAGTAATCCGGGCGATGAAAAACTTTATAAAGGTATTCACGGTTATACCGATCACAAAGCAGGTTTTAGAAGAGAACACACAGTTTCCG

Fln Alignment:

GG46A6U01CQX89___SLKGSNP--GDEKLYKGIHGYTDHKAGFRREHTVS
Q8GX84_______________ALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTIS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain