SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69717

Length: 140 nt

UniGene Fasta

>sp_v3.0_unigene69717
CGTCGTGACCTTGGCTGTCACTCAGGTGGCCTGCATTTTATGAAGGTCTTCCTGGAGCTATCAATCGGATTCCTGATCGAGATGGGCGTCGTATTGAGATAACCTGTGCTGCTTGTGGTGGCCACCTGGGTCATGTATTC

Ace file of the UniGene sp_v3.0_unigene69717

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Methionine sulfoxide reductase, putative n=1 Tax=Ricinus communis RepID=B9RX37_RICCO	-	-	4.0e-15	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Methionine sulfoxide reductase type	-	-	3.481e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peptide-methionine (S)-S-oxide reductase.	EC:1.8.4.11	-	1.948e-07	-

Source	Gene names
Sma3	AT4g04830; At4g04800; At4g04810; At4g04830; At4g21860; GSVIVT00005758001; GSVIVT00019868001; LOC_Os03g24600; MsrB1; MsrB2; OSJNBb0006J12.16; Os03g0360700; Os05g0404200; OsI_11657; OsI_19915; OsJ_10923; OsJ_18495; PHYPADRAFT_217573; PHYPADRAFT_60757; POPTR

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	peptide-methionine-(S)-S-oxide reductase activity	GO:0008113	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Methionine sulphoxide reductase B	IPR002579	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G21860.1	MSRB2 methionine sulfoxide reductase B 2 chr4:11600238-11601507 REVERSE LENGTH=202	7.0e-20	86%
RefSeq	Arabidopsis thaliana	NP_001190674.1	peptide methionine sulfoxide reductase B5 [Arabidopsis thaliana]	9.0e-20	86%
RefSeq	Populus trichocarpa	XP_002313951.1	methionine sulfoxide reductase type [Populus trichocarpa]	6.0e-22	94%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NKG2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 27 aas, your sequence is shorter than subject: 46 - 130

Fln protein: S*PWLSLRWPAFYEGLPGAINRIPDRDGRRIEITCAACGGHLGHVF

Protein Length: 47

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGGCCTGCATTTTATGAAGGTCTTCCTGGAGCTATCAATCGGATTCCTGATCGAGATGGGCGTCGTATTGAGATAACCTGTGCTGCTTGTGGTGGCCACCTGGGTCATGTATTC

Fln Alignment:

GG46A6U01D39XS___WPAFYEGLPGAINRIPDRDGRRIEITCAACGGHLGHVF
A9NKG2_______________WPAFYEGFPGAIKRTPDPDGRRIEITCAACDGHLGHVF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain