SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69708

Length: 182 nt

UniGene Fasta

>sp_v3.0_unigene69708
CGTCGTGACCTTGGCTGTCACTCAGGGTTGGGATTGCAGGTGTGCCTGCAGATACTATCATGAAAAAGACAAGGACAATAGAAGATGACTGGGTCCCCTGTTGGAATGAAGATTTTGTTTTCCCATTGTCTGTCCCTGAATTAGCATTGCTTCGTATTGAAGTTCATGAGTACGATATGTCC

Ace file of the UniGene sp_v3.0_unigene69708

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9T5Y1_RICCO	-	-	3.0e-20	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Phospholipase C	-	-	8.732e-32	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoinositide phospholipase C.	EC:3.1.4.11	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Inositol phosphate metabolism	00562	%
Sma3	Metabolic pathways	01100	%
Sma3	Phosphatidylinositol signaling system	04070	%

Source	Gene names
Sma3	56B23-g7; 56B23-g8; AT3G08510; AT5G58700; ATHATPLC5; ATHATPLC6; At2g40116; At3g08510; At3g55940; At5g58690; At5g58700; F27K19.120; GSVIVT00021509001; GSVIVT00024092001; GSVIVT00024093001; GSVIVT00024094001; GSVIVT00029293001; GSVIVT00038892001; LOC_Os03g1

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	phosphatidylinositol phospholipase C activity	GO:0004435	Molecular Function	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	phosphatidylcholine phospholipase C activity	GO:0034480	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3		GO:0007242	Biological Process	-
Sma3	lipid catabolic process	GO:0016042	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Phospholipase C, phosphatidylinositol-specific , X domain	IPR000909	-	-
Sma3	Phosphoinositide phospholipase C	IPR001192	-	-
Sma3	Phospholipase C, phosphatidylinositol-specific, Y domain	IPR001711	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Phospholipase C, phosphoinositol-specific, EF-hand-like	IPR015359	-	-
Sma3	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	IPR017946	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Integrin alpha chain, C-terminal cytoplasmic region, conserved site	IPR018184	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G55940.1	Phosphoinositide-specific phospholipase C family protein chr3:20747787-20750184 FORWARD LENGTH=584	4.0e-25	81%
RefSeq	Arabidopsis thaliana	NP_191153.1	phosphoinositide phospholipase C 7 [Arabidopsis thaliana]	5.0e-25	81%
RefSeq	Populus trichocarpa	XP_002311223.1	predicted protein [Populus trichocarpa]	5.0e-26	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLW1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 45 aas, your sequence is shorter than subject: 60 - 597

Fln protein: S*PWLSLRVGIAGVPADTIMKKTRTIEDDWVPCWNEDFVFPLSVPELALLRIEVHEYDMS

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGTTGGGATTGCAGGTGTGCCTGCAGATACTATCATGAAAAAGACAAGGACAATAGAAGATGACTGGGTCCCCTGTTGGAATGAAGATTTTGTTTTCCCATTGTCTGTCCCTGAATTAGCATTGCTTCGTATTGAAGTTCATGAGTACGATATGTCC

Fln Alignment:

GG46A6U01D15P9___RVGIAGVPADTIMKKTRTIEDDWVPCWNEDFVFPLSVPELALLRIEVHEYDMS
B8LLW1_______________RVGIAGVPADTIMKRTRAIEDDWFPCWNEEFVFPLTVPELAVLRVEVHEYDMS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain