SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69704

Length: 252 nt

UniGene Fasta

>sp_v3.0_unigene69704
CGTCGTGACCTTGGCTGTCACTCATGGGGAAGCTGATCACGGACACACGGCAGGATAATGAAAAATTTCTCGGAAAGCTCAGAGATAGAATTGACAGGGTGGGAATAGAGTTACCAACTGTGGAAGTGAGATACAAAGATTTGAATGTGGATGCTCAATGTCACATTGGCACAAGAGCTCTTCCAACACTTTGGAACGCTACCAGAAATATTTTGGATGGTGTGCTGGAGATTATGCACCTTTCTCCATCGA

Ace file of the UniGene sp_v3.0_unigene69704

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter n=2 Tax=Selaginella moellendorffii RepID=D8SFU8_SELML	-	-	7.0e-21	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	ATP-binding cassette transporter, putative	-	-	3.088e-08	-

Source	Gene names
Sma3	At1g15210; At1g59870; At3g16340; F23H11.19; F9L1.15; GSVIVT00021655001; GSVIVT00034310001; GSVIVT00034318001; LOC_Os01g52560; LOC_Os06g36090; MYA6.14; Os01g0724400; Os01g0724500; Os06g0554800; OsI_03578; OsI_23352; OsJ_03311; OsJ_21675; P0458E11.3-1; P045

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cadmium ion transmembrane transporter activity	GO:0015086	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	cadmium ion transport	GO:0015691	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G36380.1	PDR6, ATPDR6 pleiotropic drug resistance 6 chr2:15257583-15263627 FORWARD LENGTH=1453	3.0e-19	49%
RefSeq	Arabidopsis thaliana	NP_181179.2	ABC transporter G family member 34 [Arabidopsis thaliana]	4.0e-19	49%
RefSeq	Populus trichocarpa	XP_002298123.1	pleiotropic drug resistance, ABC transporter family protein, partial [Populus trichocarpa]	2.0e-21	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN70

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 282 aas, your sequence is shorter than subject: 83 - 443

Fln protein: S*PWLSLMGKLITDTRQDNEKFLGKLRDRIDRVGIELPTVEVRYKDLNVDAQCHIGTRALPTLWNATRNILDGVLEIMHLSPS

Protein Length: 84

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGGGAAGCTGATCACGGACACACGGCAGGATAATGAAAAATTTCTCGGAAAGCTCAGAGATAGAATTGACAGGGTGGGAATAGAGTTACCAACTGTGGAAGTGAGATACAAAGATTTGAATGTGGATGCTCAATGTCACATTGGCACAAGAGCTCTTCCAACACTTTGGAACGCTACCAGAAATATTTTGGATGGTGTGCTGGAGATTATGCACCTTTCTCCATCGA

Fln Alignment:

GG46A6U01DSAVA___LMGKLITDTRQDNEKFLGKLRDRIDRVGIELPTVEVRYKDLNVDAQCHIGTRALPTLWNATRNILDGVLEIMHL
B8LN70_______________LIDRLLGVTDQDNERFLLKLRQRLDGVGIIIPEIEIRFQDLNISADVYVGSRALPTLINWTVNIVEDALETLRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain