SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69695

Length: 199 nt

UniGene Fasta

>sp_v3.0_unigene69695
CGTCGTGACCTTGGCTGTCACTCATTTAGGTGGGAAGATAGCAGAGCAAGGACAGGCTATGTACAAACGGCGTGAGCAACTGTTTACAGAGCAACGACGCAAGGTTGACTTGAAATCTTTTGCAAATTGGGAAGACTCGCCAGAGAAGATGATGATGGATCTAATGGCCAACCCCAATAGAGTCCAGCGCGAGGATCGT

Ace file of the UniGene sp_v3.0_unigene69695

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Uncharacterized protein; Zea mays (Maize).	-	-	0.0	63%

Source	Gene names
Sma3	AT5G39590; At5g39590; GSVIVT00014462001; OSIGBa0099L20.7; OSJNBa0084K01.19; Os04g0663700; OsI_17800; OsJ_16520; PHYPADRAFT_142607; POPTRDRAFT_550912; POPTRDRAFT_831669; RCOM_1596990;

Source	InterPros	Term	Type	e value	Identity
Sma3	TLDc	IPR006571	-	0.0	-
Sma3	WD40 repeat, conserved site	IPR019775	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G39590.1	TLD-domain containing nucleolar protein chr5:15851483-15853768 FORWARD LENGTH=542	1.0e-20	57%
RefSeq	Arabidopsis thaliana	NP_198775.1	TLD-domain containing nucleolar protein [Arabidopsis thaliana]	1.0e-20	57%
RefSeq	Populus trichocarpa	XP_002300721.1	predicted protein [Populus trichocarpa]	1.0e-24	68%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: B4FYC9

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 66 - 135

Fln protein: VVTLAVTHLGGKIAEQGQAMYKRREQLFTEQRRKVDLKSFANWEDSPEKMMMDLMANPNRVQREDR

Protein Length: 67

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTAGGTGGGAAGATAGCAGAGCAAGGACAGGCTATGTACAAACGGCGTGAGCAACTGTTTACAGAGCAACGACGCAAGGTTGACTTGAAATCTTTTGCAAATTGGGAAGACTCGCCAGAGAAGATGATGATGGATCTAATGGCCAACCCCAATAGAGTCCAGCGCGAGGATCGT

Fln Alignment:

GG46A6U01DQY4S___VVTLAVTHLGGKIAEQGQAMYKRREQLFTEQRRKVDLKSFANWEDSPEKMMMDLMANPNRVQREDR
B4FYC9_______________VLDVEVWGLGGEATKRQQNMYKKREDIFSEQRRKVDLKTFASWEDSPEKMMMDMMSDPNTVRREDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain