SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69693

Length: 180 nt

UniGene Fasta

>sp_v3.0_unigene69693
CGTCGTGACCTTGGCTGTCACTCAGATTTGGATGCTTGGATAGATCTTAAAAAGGCTGGAAAATCGGACAACCTAGAAGATACTGTCAGCTATGCTGAAATTTATAGCCTCATCAAGGATGTTATTGAAGGTCCACCTCATTCTCTCCTTGAATCAGTTGCTGATTCCATTGCATCTAGC

Ace file of the UniGene sp_v3.0_unigene69693

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dihydroneopterin aldolase n=3 Tax=Arabidopsis RepID=FOLB1_ARATH	-	-	5.0e-13	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Dihydroneopterin aldolase	-	-	5.785e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dihydroneopterin aldolase.	EC:4.1.2.25	-	6.056e-10	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Folate biosynthesis	00790		6.056e-10	%
Sma3	Metabolic pathways	01100		6.056e-10	%

Source	Gene names
Sma3	At3g11750; F26K24.4; FOLB1; OJ1150_A11.9; Os08g0556200; OsI_30221; OsJ_28246; P0439B07.24; POPTRDRAFT_825166; RCOM_0422000;

Source	GOs	Term	Type	e value	Identity
Sma3	dihydroneopterin aldolase activity	GO:0004150	Molecular Function	0.0	-
Sma3	folic acid-containing compound metabolic process	GO:0006760	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Dihydroneopterin aldolase	IPR006156	-	0.0	-
Sma3	Dihydroneopterin aldolase/epimerase domain	IPR006157	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G11750.1	FOLB1 Dihydroneopterin aldolase chr3:3715071-3715904 REVERSE LENGTH=146	3.0e-19	64%
RefSeq	Arabidopsis thaliana	NP_187781.1	Dihydroneopterin aldolase [Arabidopsis thaliana]	4.0e-19	64%
RefSeq	Populus trichocarpa	XP_002323367.1	predicted protein [Populus trichocarpa]	8.0e-19	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NSQ3

Fln msg: Distance to subject end: 41 aas, your sequence is shorter than subject: 60 - 131

Fln protein: RRDLGCHSDLDAWIDLKKAGKSDNLEDTVSYAEIYSLIKDVIEGPPHSLLESVADSIASS

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTTGGATGCTTGGATAGATCTTAAAAAGGCTGGAAAATCGGACAACCTAGAAGATACTGTCAGCTATGCTGAAATTTATAGCCTCATCAAGGATGTTATTGAAGGTCCACCTCATTCTCTCCTTGAATCAGTTGCTGATTCCATTGCATCTAGC

Fln Alignment:

GG46A6U01D0X8U___DLDAWIDLKKAGKSDNLEDTVSYAEIYSLIKDVIEGPPHSLLESVADSIASS
A9NSQ3_______________DLDAWLDLKRAGKSDNLEDTVSYAEIYSLIKEVIEGPPHSLLESVADSIASS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain