SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69690

Length: 236 nt

UniGene Fasta

>sp_v3.0_unigene69690
CGTCGTGACCTTGGCTGTCACTCAGCTTATCTAGATCCTGACAGTTCACTTCAAAGCTGGGATGCAAACACTGATATACAATATTGGGAGCATGTCACATTTGACGCGGATAACCGTGTTACAAGACTGGACTTGGGCGGCTTAAATCTCGCTGGTCATCTTGCTCCTGAGCTTGGGAACCTTGCACAATTACAATATCTGTTGGTTTATGAAAATGGCATTACTGGGAACATTCC

Ace file of the UniGene sp_v3.0_unigene69690

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat protein n=1 Tax=Solenostemon scutellarioides RepID=C1K240_SOLSC	-	-	9.0e-15	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Leucine-rich repeat protein	-	-	2.862e-10	-

Source	Gene names
Sma3	AT5G21090; AT5g21090/T10F18_120; At5g21090; FOR1; GSVIVT00006962001; GSVIVT00017420001; GSVIVT00023333001; LRP; LRR; OSJNBa0036E02.4; Os01g0279800; Os01g0809300; OsI_01404; OsI_04146; OsJ_01312; P0003H10.11-1; P0468B07.21; POPTRDRAFT_1067790; POPTRDRAFT_6

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	signal transduction	GO:0007165	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Transketolase, N-terminal	IPR005474	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G21090.1	Leucine-rich repeat (LRR) family protein chr5:7164758-7166904 FORWARD LENGTH=218	6.0e-20	60%
RefSeq	Arabidopsis thaliana	NP_197608.1	leucine-rich repeat-containing protein [Arabidopsis thaliana]	8.0e-20	60%
RefSeq	Populus trichocarpa	XP_002314247.1	predicted protein [Populus trichocarpa]	7.0e-20	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NTW8

Fln msg: Distance to subject end: 106 aas, your sequence is shorter than subject: 78 - 216

Fln protein: RRDLGCHSAYLDPDSSLQSWDANTDIQYWEHVTFDADNRVTRLDLGGLNLAGHLAPELGNLAQLQYLLVYENGITGNI

Protein Length: 79

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTATCTAGATCCTGACAGTTCACTTCAAAGCTGGGATGCAAACACTGATATACAATATTGGGAGCATGTCACATTTGACGCGGATAACCGTGTTACAAGACTGGACTTGGGCGGCTTAAATCTCGCTGGTCATCTTGCTCCTGAGCTTGGGAACCTTGCACAATTACAATATCTGTTGGTTTATGAAAATGGCATTACTGGGAACATTCC

Fln Alignment:

GG46A6U01EN4FO___LDPDSSLQSWDAN-TDIQYWEHVTFDADNRVTRLDLGGLNLAGHLAPELGNLAQLQYLLVYENGITGNI
A9NTW8_______________LDPDNVLQSWDPTLVNPCTWFHVTCDQNNRVIRVDLGNSNLSGHLVPELGMLEHLQYLELYKNNITGNI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain