SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69676

Length: 162 nt

UniGene Fasta

>sp_v3.0_unigene69676
CGTCGTGACCTTGGCTGTCACTCAGATTATGGATTGGATATTTTTGTTTGTGGGGATCAAATACGCAAGGGAGCTGCTCTAAATGCAGTACAAATTGCAGAGAGGCTACTATAAGAACTTTAGGAGTGAATAATATTTTGATGATCGTTATCCCATTCAGTT

Ace file of the UniGene sp_v3.0_unigene69676

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F10B6.22 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KCK0_ARALL	-	-	2.0e-08	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Aspartate semialdehyde dehydrogenase	-	-	4.107e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aspartate-semialdehyde dehydrogenase.	EC:1.2.1.11	-	1.232e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycine, serine and threonine metabolism	00260	1.232e-08	%
Sma3	Cysteine and methionine metabolism	00270	1.232e-08	%
Sma3	Lysine biosynthesis	00300	1.232e-08	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	1.232e-08	%
Sma3	Biosynthesis of plant hormones	01070	1.232e-08	%
Sma3	Metabolic pathways	01100	1.232e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	1.232e-08	%

Source	Gene names
Sma3	ASDH; ASSD1; At1g14810; CHLREDRAFT_148810; GSVIVT00030599001; LOC_Os03g55280; OSJNBb0048A17.6; Os03g0760700; OsI_13624; OsJ_12673; PHYPADRAFT_147643; POPTRDRAFT_564677; POPTRDRAFT_566429; POPTRDRAFT_591327; RCOM_0053530; VITISV_041291;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	aspartate-semialdehyde dehydrogenase activity	GO:0004073	Molecular Function	-
Sma3	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	GO:0016620	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	cellular amino acid biosynthetic process	GO:0008652	Biological Process	-
Sma3	methionine biosynthetic process	GO:0009086	Biological Process	-
Sma3	threonine biosynthetic process	GO:0009088	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Semialdehyde dehydrogenase, NAD-binding	IPR000534	-	-
Sma3	CRAL-TRIO domain	IPR001251	-	-
Sma3	Aspartate-semialdehyde dehydrogenase, beta-type	IPR005986	-	-
Sma3	Aspartate-semialdehyde dehydrogenase	IPR012080	-	-
Sma3	Semialdehyde dehydrogenase, dimerisation domain	IPR012280	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G14810.1	semialdehyde dehydrogenase family protein chr1:5102684-5104633 REVERSE LENGTH=375	3.0e-12	78%
RefSeq	Arabidopsis thaliana	NP_172934.1	semialdehyde dehydrogenase-like protein [Arabidopsis thaliana]	4.0e-12	78%
RefSeq	Populus trichocarpa	XP_002311534.1	predicted protein [Populus trichocarpa]	9.0e-12	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9F9

Fln msg: your sequence is shorter than subject: 38 - 397

Fln protein: RRDLGCHSDYGLDIFVCGDQIRKGAALNAVQIAERLL*

Protein Length: 39

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTATGGATTGGATATTTTTGTTTGTGGGGATCAAATACGCAAGGGAGCTGCTCTAAATGCAGTACAAATTGCAGAGAGGCTACTATAA___GAACTTTAGGAGTGAATAATATTTTGATGATCGTTATCCCATTCAGTT

Fln Alignment:

GG46A6U01CNRZ5___RRDLGCHSDYGLDIFVCGDQIRKGAALNAVQIAERLL
D5A9F9_______________RQDASQNGDYGLDIFVCGDQIRKGAALNAVQIAERLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain