SustainPineDB

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Assembly info
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SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69674

Length: 210 nt

UniGene Fasta

>sp_v3.0_unigene69674
CGTCGTGACCTTGGCTGTCACTCATCTATCCGCAATTTCGTTCTCCATGTCGTGGAGGCTGTCACGGATCGACTCTTGCCAATTCTAGAGGAGGCGAGCGAGCGGGGTAGTTGCTTGGATTTGCAGGATATTCTGCAGCGTTTTGCGTTTGATAACATATGCAAAGTTGCGTTCGGGGTCGATCCGGCTTTTTTGGATGGGAGTCTTCCT

Ace file of the UniGene sp_v3.0_unigene69674

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Cytochrome P450 94A1; AltName: Full=P450-dependent fatty acid omega-hydroxylase gb\|AAD10204.1\| CYP94A1 [Vicia sativa]	-	-	3.0e-12	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Cytochrome P450-dependent fatty acid hydroxylase	-	-	1.182e-15	-

Source	Gene names
Sma3	CYP94A1; CYP94A10; CYP94A11; CYP94A12; CYP94A13; CYP94A14; CYP94A3; CYP94A4; CYP94A5; CYP94A6; CYP94A9v1; CYP94A9v2; CYP94D22; CYP94D23v1; CYP94D23v2; CYP94D24; GSVIVT00023301001; GSVIVT00023878001; Os01g0804400; OsI_04116; OsI_04118; OsI_04120; OsJ_03786

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G56630.1	CYP94D2 cytochrome P450, family 94, subfamily D, polypeptide 2 chr3:20978953-20980512 FORWARD LENGTH=499	2.0e-14	56%
RefSeq	Arabidopsis thaliana	NP_191222.1	cytochrome P450, family 94, subfamily D, polypeptide 2 [Arabidopsis thaliana]	3.0e-14	56%
RefSeq	Populus trichocarpa	XP_002300790.1	cytochrome P450 [Populus trichocarpa]	3.0e-17	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A7Y6

Fln msg: Distance to subject end: 345 aas, your sequence is shorter than subject: 70 - 559

Fln protein: RRDLGCHSSIRNFVLHVVEAVTDRLLPILEEASERGSCLDLQDILQRFAFDNICKVAFGVDPAFLDGSLP

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTATCCGCAATTTCGTTCTCCATGTCGTGGAGGCTGTCACGGATCGACTCTTGCCAATTCTAGAGGAGGCGAGCGAGCGGGGTAGTTGCTTGGATTTGCAGGATATTCTGCAGCGTTTTGCGTTTGATAACATATGCAAAGTTGCGTTCGGGGTCGATCCGGCTTTTTTGGATGGGAGTCTTCCT

Fln Alignment:

GG46A6U01ANU71___SIRNFVLHVVEAVTDRLLPILEEASERGSCLDLQDILQRFAFDNICKVAFGVDPAFLDG
D5A7Y6_______________SLRNFVLKVVEEVTDRLLPMLHNASETGRCLNLQDILQRFAFDTICKVAFGVDPAWLDG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain