SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69625

Length: 319 nt

UniGene Fasta

>sp_v3.0_unigene69625
CGTCGTGACCTTGGCTGTCACTCAGTTGGCGTTACAGTTGAATCTTAGTCTTCGACAAGTTGAAGTGTGGTTCCAGAACAGACGAGCAAGGACAAAGCTGAAGCAAATCGAAGTGGACTGCGAGGTTATGAAGAGATATAATGAGGCACTTGCAGAGGAGAACAGAAAACTTCACATAGAGGTGGAAAAACTGAAAGCTCTCCAAATGCCATCGCCACCTCTGAGGCCCGCGTCAACCCTTAGGATGTGCCCCTCCTGTGAAAGAGTTTCAGTAGCTAACAATAGCAGCGACTTGGATCTGGCGAAATCTCGGTCTATA

Ace file of the UniGene sp_v3.0_unigene69625

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Homeobox-leucine zipper protein HOX17 n=4 Tax=Oryza sativa RepID=HOX17_ORYSJ	-	-	3.0e-24	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Homeobox-leucine zipper protein ATHB-4	-	-	1.322e-16	-

Source	Gene names
Sma3	24.t00025; 25.t00036; 31.t00070; 40.t00018; 57h21.15; ATHB-17; ATHB-2; ATHB-4; ATHB-X; ATHB18; At1g70920; At2g01430; At2g22800; At2g44910; At3g60390; At4g16780; At4g17460; At4g37790; At5g06710; At5g47370; CPHB-3; Crhb10; Crhb2; Crhb3; Crhb9; EcHB1; F2I9.5

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	shade avoidance	GO:0009641	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	response to far red light	GO:0010218	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3	HD-ZIP protein, N-terminal	IPR006712	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G60390.1	HAT3 homeobox-leucine zipper protein 3 chr3:22320788-22322370 REVERSE LENGTH=315	1.0e-29	62%
RefSeq	Arabidopsis thaliana	NP_191598.1	homeobox-leucine zipper protein HAT3 [Arabidopsis thaliana]	1.0e-29	62%
RefSeq	Populus trichocarpa	XP_002314223.1	predicted protein [Populus trichocarpa]	1.0e-30	63%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX56

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 106 - 317

Fln protein: VVTLAVTQLALQLNLSLRQVEVWFQNRRARTKLKQIEVDCEVMKRYNEALAEENRKLHIEVEKLKALQMPSPPLRPASTLRMCPSCERVSVANNSSDLDLAKSRSI

Protein Length: 107

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGGCGTTACAGTTGAATCTTAGTCTTCGACAAGTTGAAGTGTGGTTCCAGAACAGACGAGCAAGGACAAAGCTGAAGCAAATCGAAGTGGACTGCGAGGTTATGAAGAGATATAATGAGGCACTTGCAGAGGAGAACAGAAAACTTCACATAGAGGTGGAAAAACTGAAAGCTCTCCAAATGCCATCGCCACCTCTGAGGCCCGCGTCAACCCTTAGGATGTGCCCCTCCTGTGAAAGAGTTTCAGTAGCTAACAATAGCAGCGACTTGGATCTGGCGAAATCTCGGTCTATA

Fln Alignment:

GG46A6U01A5IT0___LALQLNLSLRQVEVWFQNRRARTKLKQIEVDCEVMKRYNEALAEENRKLHIEVEKLKALQMPSPPL----------RPASTLRMCPSCERVSVANNSSDLDLAKSRS
A9NX56_______________LAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELRALKAAPQPCVIGQDNYYMPLPATTLTMCPSCERVATMENSHSRSLQFSKS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain