SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69618

Length: 256 nt

UniGene Fasta

>sp_v3.0_unigene69618
CGTCGTGACCTTGGCTGTCACTCAATTTCAAGGGTGTCCATCATTTCTGATGGATGGAAAGATCAAAGAAATAGGCCTTTGATCAATGTGATTGCTTAGAGCCCACATGGGGCAATGTTTTTGAAGGCAGTGGATTGTGAGGGGTAGATGAAAGATTCTCAATTCATTGCTAACATCTTGATTGAAGCAATTGAATTGGTGGGGCCTGAAATGTTGTCCAGGTAATAACTGACAATGCAACGTGTGTAGAGCAGCG

Ace file of the UniGene sp_v3.0_unigene69618

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os02g0513700 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0E0X9_ORYSJ	-	-	9.0e-10	46%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	52%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: D7KAR1

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 20 aas, your sequence is shorter than subject: 75 - 120

Fln protein: RRDLGCHSISRVSIISDGWKDQRNRPLINVIA*SPHGAMFLKAVDCEG*MKDSQFIANILIEAIELVGPEMLSR*

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCAAGGGTGTCCATCATTTCTGATGGATGGAAAGATCAAAGAAATAGGCCTTTGATCAATGTGATTGCTTAGAGCCCACATGGGGCAATGTTTTTGAAGGCAGTGGATTGTGAGGGGTAGATGAAAGATTCTCAATTCATTGCTAACATCTTGATTGAAGCAATTGAATTGGTGGGGCCTGAAATGTTGTCCAGGTAA___TAACTGACAATGCAACGTGTGTAGAGCAGCG

Fln Alignment:

GG46A6U01B8YZD___VSIISDGWKDQRNRPLINVIA*SPHGAMFLKAVDCEG*MKDSQFIANILIEAIELVG
D7KAR1_______________VTIVSDGWSDPTRKPLINFIAITGNAPLFLKAVDCSGKVKDKFFISNLMKEVINEVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain