SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69563

Length: 181 nt

UniGene Fasta

>sp_v3.0_unigene69563
CGTCGTGACCTTGGCTGTCACTCATAGTAGTGCTCCTGTGAAAAATGCTTCTGCATATAGGACAAAGTTTGAAGCAGCATTGCCTGATATTATGGAAAGCTTTAATGACTTATACCGAACATCACTGGTCGGATTACTGCAGAAGCTTTGAAGGAGAGAGTGATGAAAGCTCTCCAGGTTT

Ace file of the UniGene sp_v3.0_unigene69563

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative U2-associated SR140 protein [Oryza sativa Japonica Group]	-	-	5.0e-14	84%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	93%

Source	Gene names
Sma3	At5g25060; GSVIVT00032794001; OsI_06097; OsJ_05621; P0544B02.29-2; PHYPADRAFT_193248; PHYPADRAFT_234486; POPTRDRAFT_819630; POPTRDRAFT_825788; RCOM_0920760; T30N20_70; VITISV_025939;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SWAP/Surp	IPR000061	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	DNA-binding SAP	IPR003034	-	-
Sma3	RNA polymerase II, large subunit, CTD	IPR006569	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	mRNA splicing factor, Cwf21	IPR013170	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G25060.1	RNA recognition motif (RRM)-containing protein chr5:8634219-8639984 REVERSE LENGTH=946	8.0e-16	87%
RefSeq	Arabidopsis thaliana	NP_568464.1	U2-associated protein SR140 [Arabidopsis thaliana]	1.0e-15	87%
RefSeq	Populus trichocarpa	XP_002308714.1	predicted protein [Populus trichocarpa]	3.0e-17	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HB72

Fln msg: Overlapping hits, possible frame ERROR between 121 and 109, Distance to subject end: 412 aas, your sequence is shorter than subject: 60 - 988

Fln protein: VVTLAVTHSSAPVKNASAYRTKFEAALPDIMESFNxxxxxxTGRITAEALKERVMKALQV

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCATAGTAGTGCTCCTGTGAAAAATGCTTCTGCATATAGGACAAAGTTTGAAGCAGCATTGCCTGATATTATGGAAAGCTTTAATxxxxxxxxxxxxxxxxxxACTGGTCGGATTACTGCAGAAGCTTTGAAGGAGAGAGTGATGAAAGCTCTCCAGGTTT

Fln Alignment:

GG46A6U01AVPBG___HSSAPVKNASAYRTKFEAALPDIMESFNDxxxxITGRITAEALKERVMKALQV
B9HB72_______________NSSAPVKNASAYRTKFEAALPDIMESFNDxxxxITGRITAEALKERVLKVLQV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain