UniGene Name: sp_v3.0_unigene69536
Length: 184 nt
UniGene Fasta |
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>sp_v3.0_unigene69536
C |
Ace file of the UniGene sp_v3.0_unigene69536 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | DNA-directed RNA polymerase n=37 Tax=Spermatophyta RepID=C5YGY9_SORBI | - | - | 3.0e-20 | 94% |
FL-Next | sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). | - | - | 0.0 | 87% |
Sma3 | DNA-directed RNA polymerase | - | - | 3.761e-22 | - |
Source | ECs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | DNA-directed RNA polymerase. | EC:2.7.7.6 | - | 1.663e-20 | - |
Source | KEGGs | Term | Type | e value | Identity |
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Sma3 | Purine metabolism | 00230 | 1.663e-20 | % | |
Sma3 | Pyrimidine metabolism | 00240 | 1.663e-20 | % | |
Sma3 | Metabolic pathways | 01100 | 1.663e-20 | % |
Source | Gene names |
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Sma3 | At4g35800; F4B14.70; GSVIVT00015507001; Os05g0151000; OsI_27866; OsJ_17146; OsJ_26081; OsJ_26085; P0001A07.9; PHATRDRAFT_15555; PHYPADRAFT_101222; PHYPADRAFT_93853; RCOM_0782880; RPB1; RPB1-B1 or gene B1; RPB1-B2; RPB1-C; RPB205; RPII; THAPSDRAFT_168; rpb |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | DNA-directed RNA polymerase II, core complex | GO:0005665 | Cellular Component | 0.0 | - |
Sma3 | vacuole | GO:0005773 | Cellular Component | 0.0 | - |
Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
Sma3 | magnesium ion binding | GO:0000287 | Molecular Function | 0.0 | - |
Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
Sma3 | DNA-directed RNA polymerase activity | GO:0003899 | Molecular Function | 0.0 | - |
Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
Sma3 | zinc ion binding | GO:0008270 | Molecular Function | 0.0 | - |
Sma3 | transcription from RNA polymerase II promoter | GO:0006366 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Formate/nitrite transporter | IPR000292 | - | 0.0 | - |
Sma3 | RNA polymerase II, heptapeptide repeat, eukaryotic | IPR000684 | - | 0.0 | - |
Sma3 | RNA polymerase, alpha subunit | IPR000722 | - | 0.0 | - |
Sma3 | Hydroxymethylglutaryl-CoA reductase, class I/II | IPR002202 | - | 0.0 | - |
Sma3 | RNA polymerase, N-terminal | IPR006592 | - | 0.0 | - |
Sma3 | RNA polymerase Rpb1, domain 3 | IPR007066 | - | 0.0 | - |
Sma3 | RNA polymerase Rpb1, domain 7 | IPR007073 | - | 0.0 | - |
Sma3 | RNA polymerase Rpb1, domain 6 | IPR007075 | - | 0.0 | - |
Sma3 | RNA polymerase Rpb1, domain 1 | IPR007080 | - | 0.0 | - |
Sma3 | RNA polymerase Rpb1, domain 5 | IPR007081 | - | 0.0 | - |
Sma3 | RNA polymerase Rpb1, domain 4 | IPR007083 | - | 0.0 | - |
Sma3 | Protein kinase, ATP binding site | IPR017441 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT4G35800.1 | NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS RNA polymerase II large subunit chr4:16961115-16967892 REVERSE LENGTH=1839 | 1.0e-23 | 87% |
RefSeq | Arabidopsis thaliana | NP_195305.2 | DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana] | 1.0e-23 | 87% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: sp_plants
Fln subject: P18616
Fln msg: Distance to subject end: 364 aas, your sequence is shorter than subject: 61 - 1839
Fln protein:
R
Protein Length:
62
Fln nts:
C
Fln Alignment:
GG46A6U01DEXF4___SFEETVDILLDAAVYAEGDPLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAI
P18616_______________SFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAI
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain