SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69452

Length: 188 nt

UniGene Fasta

>sp_v3.0_unigene69452
CGTCGTGACCTTGGCTGTCACTCAAAACACCAAAAGGAGGCAAAGGAGACTGGAAAGGCAGCCAGGGAATTTATACTGAATGAATTGAAAATGTCGAATGTGTACGATTACATGTTCCATGTTCTAAACGAGTACGCGAAGCTATTGAAATATAAACCCACTGTTCCAGAAAAGGCTTCCGAGTACTG

Ace file of the UniGene sp_v3.0_unigene69452

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] gb\|AEE34097.1\| uncharacterized protein [Arabidopsis thaliana]	-	-	1.0e-11	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	KDEL motif-containing protein 1, putative	-	-	4.09e-09	-

Source	Gene names
Sma3	GSVIVT00010512001; GSVIVT00026808001; GSVIVT00026812001; POPTRDRAFT_667034; POPTRDRAFT_757485; RCOM_1495960; RCOM_1686330; VITISV_008288; VITISV_012498; VITISV_020976; VITISV_037876;

Source	InterPros	Term	Type	Identity
Sma3	Lipopolysaccharide-modifying protein	IPR006598	-	-
Sma3	Protein of unknown function DUF821, CAP10-like	IPR008539	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G63420.1	Arabidopsis thaliana protein of unknown function (DUF821) chr1:23515874-23518777 FORWARD LENGTH=578	4.0e-16	57%
RefSeq	Arabidopsis thaliana	NP_176531.1	uncharacterized protein [Arabidopsis thaliana]	5.0e-16	57%
RefSeq	Populus trichocarpa	XP_002321919.1	predicted protein, partial [Populus trichocarpa]	7.0e-18	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9F8

Fln msg: Distance to subject end: 65 aas, your sequence is shorter than subject: 62 - 492

Fln protein: RRDLGCHSKHQKEAKETGKAAREFILNELKMSNVYDYMFHVLNEYAKLLKYKPTVPEKASEY

Protein Length: 63

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAACACCAAAAGGAGGCAAAGGAGACTGGAAAGGCAGCCAGGGAATTTATACTGAATGAATTGAAAATGTCGAATGTGTACGATTACATGTTCCATGTTCTAAACGAGTACGCGAAGCTATTGAAATATAAACCCACTGTTCCAGAAAAGGCTTCCGAGTACTG

Fln Alignment:

GG46A6U01AXU8G___SKHQKEAKETGKAAREFILNELKMSNVYDYMFHVLNEYAKLLKYKPTVPEKASEY
D5A9F8_______________NKHPKEAMEIAKEAIKFIQNELKMSNVYDYMFHILNEYSKLLKYKPSVSEKAAEY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain