SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69449

Length: 189 nt

UniGene Fasta

>sp_v3.0_unigene69449
CGTCGTGACCTTGGCTGTCACTCATACTCTCTCAGTCGGTTTTATCACCACTGCCAATAAATTGTTCAGCAAAATGCTTGAGAAGGGAGACGTGTTCGTGTTCCCCAAAGCTCTGGTGCACTTCCAACAGAACGTGGGCTATGGCAACGCAGTGGCCATTTCTGCACTGAGCAGCCAGTTTCCAGGAAC

Ace file of the UniGene sp_v3.0_unigene69449

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Germin-like protein 2 (Fragment) n=2 Tax=Picea abies RepID=Q4VSU6_PICAB	-	-	8.0e-17	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Germin-like protein	-	-	2.72e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Superoxide dismutase.	EC:1.15.1.1	-	1.239e-08	-

Source	Gene names
Sma3	At1g02335; At1g02335/T6A9_29; At1g09560; At5g38910; At5g38930; At5g38940; B1099H05.17; B1099H05.26; B1099H05.29; B1099H05.34; B1099H05.37; B1099H05.39; B1099H05.40; F14J9.22; GER1; GER2; GER4; GER5; GER5a; GER6a; GER8; GLP; GLP2; GLP4; GLP5; GSVIVT0000625

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	superoxide dismutase activity	GO:0004784	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	nutrient reservoir activity	GO:0045735	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Germin	IPR001929	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G09560.1	GLP5 germin-like protein 5 chr1:3093896-3094639 FORWARD LENGTH=219	5.0e-17	59%
RefSeq	Arabidopsis thaliana	NP_172427.1	germin-like protein subfamily 2 member 1 [Arabidopsis thaliana]	7.0e-17	59%
RefSeq	Populus trichocarpa	XP_002330550.1	predicted protein [Populus trichocarpa]	1.0e-18	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNR8

Fln msg: Distance to subject end: 39 aas, your sequence is shorter than subject: 62 - 225

Fln protein: VVTLAVTHTLSVGFITTANKLFSKMLEKGDVFVFPKALVHFQQNVGYGNAVAISALSSQFPG

Protein Length: 63

Fln nts: CGTCGTGACCTTGGCTGTCACTCATACTCTCTCAGTCGGTTTTATCACCACTGCCAATAAATTGTTCAGCAAAATGCTTGAGAAGGGAGACGTGTTCGTGTTCCCCAAAGCTCTGGTGCACTTCCAACAGAACGTGGGCTATGGCAACGCAGTGGCCATTTCTGCACTGAGCAGCCAGTTTCCAGGAAC

Fln Alignment:

GG46A6U01D1NCJ___VTHTLSVGFITTANKLFSKMLEKGDVFVFPKALVHFQQNVGYGNAVAISALSSQFPG
B8LNR8_______________VEGTLYSGFVTSQNKLYAKILHKGDVMVFPRGLVHFQMNVGSKPAVIVGTFNSQNPG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain