SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69434

Length: 151 nt

UniGene Fasta

>sp_v3.0_unigene69434
CGTCGTGACCTTGGCTGTCACTCAATGACTATCATACAGATGCCTCTTGGTTGACAGCTCATGGGGGTGAACTATGAATGCTGTAATGATGTGGATTACTCAGAAAGGACAGTTATCAAATATTGGCTTCGCTATTGTCCCTGGGCACTTG

Ace file of the UniGene sp_v3.0_unigene69434

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	GOs	Term	Type	e value	Identity
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	0.0	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNJ4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 82 aas, your sequence is shorter than subject: 50 - 318

Fln protein: RRDLGCHSMTIIQMPLG*QLMGVNYECCNDVDYSERTVIKYWLRYCPWAL

Protein Length: 51

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGACTATCATACAGATGCCTCTTGGTTGACAGCTCATGGGGGTGAACTATGAATGCTGTAATGATGTGGATTACTCAGAAAGGACAGTTATCAAATATTGGCTTCGCTATTGTCCCTGGGCACTTG

Fln Alignment:

GG46A6U01AHHUL___GVNYECCNDVDYSERTVIKYWLRYCPWAL
A9NNJ4_______________GVNYESCNDVDYSERTVIKYWLRYCPWAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain