SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69428

Length: 179 nt

UniGene Fasta

>sp_v3.0_unigene69428
CGTCGTGACCTTGGCTGTCACTCATACCATCGGGAATGAACCGAGCAGTAATCCCTATCCCCTAGTCGTCGCTTTAGATCCATCCGAATCGAATCAATTTGTTCAATTTGTTCTTGGAATGACAGATGGAGGAGTTCATGTTATTGAGCCTTCAGAGTAACAAGGGAAATGGGGTGTTG

Ace file of the UniGene sp_v3.0_unigene69428

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Topless-related protein 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G15880.2	-	2.0e-11	58%
RefSeq	Arabidopsis thaliana	NP_001189905.1	Topless-related protein 4 [Arabidopsis thaliana]	2.0e-11	58%
RefSeq	Populus trichocarpa	XP_002329020.1	predicted protein, partial [Populus trichocarpa]	3.0e-11	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q27GK7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 23 aas, your sequence is shorter than subject: 53 - 1135

Fln protein: VVTLAVTHTIGNEPSSNPYPLVVALDPSESNQFVQFVLGMTDGGVHVIEPSE*

Protein Length: 54

Fln nts: CGTCGTGACCTTGGCTGTCACTCATACCATCGGGAATGAACCGAGCAGTAATCCCTATCCCCTAGTCGTCGCTTTAGATCCATCCGAATCGAATCAATTTGTTCAATTTGTTCTTGGAATGACAGATGGAGGAGTTCATGTTATTGAGCCTTCAGAGTAACAAGGGAAATGGGGTGTTG

Fln Alignment:

GG46A6U01BRMOX___NEPSSNPYPLVVALDPSESNQFVQFVLGMTDGGVHVIEPSE*QGKWGV
Q27GK7_______________SNPSSRVYPATVAAHPSEPNQFA---VGLTDGGVHVIEPPGPEGKWGI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain