SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69427

Length: 213 nt

UniGene Fasta

>sp_v3.0_unigene69427
CGTCGTGACCTTGGCTGTCACTCATTTTTCACTGCTCCAAGCCGTAGATACAAAGAACTTTAGGAGTATCATGCTACATTTCTTGAAACGGTNCCTTTCAAGACAATTGCCACTTTCACCATTTTCCAGACATGTTATTTGCTGGCATGTTTTGGTATCACATGGGTGCCTATAGATGGTGTTCTCTTCCCACTACTAATCATGTTGTAACTT

Ace file of the UniGene sp_v3.0_unigene69427

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Anion exchanger family protein (Fragment) n=2 Tax=Populus trichocarpa RepID=B9I3B1_POPTR	-	-	4.0e-23	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Anion exchanger family protein	-	-	3.423e-31	-

Source	Gene names
Sma3	At2g47160; At3g06450; At3g62270; BOR1; BOR2; BOR3; F24P17.6; GSVIVT00016067001; GSVIVT00016835001; GSVIVT00019680001; GSVIVT00028176001; GSVIVT00032596001; LOC_Os12g37840; Os01g0175600; Os01g0175700; Os12g0566000; OsI_00611; OsI_00613; OsI_38753; OsJ_0058

Source	GOs	Term	Type	Identity
Sma3	endosome	GO:0005768	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	inorganic anion exchanger activity	GO:0005452	Molecular Function	-
Sma3	anion transport	GO:0006820	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Bicarbonate transporter, eukaryotic	IPR003020	-	0.0	-
Sma3	Bicarbonate transporter, C-terminal	IPR011531	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G47160.2	-	3.0e-26	76%
RefSeq	Arabidopsis thaliana	NP_850469.1	boron transporter 1 [Arabidopsis thaliana]	3.0e-26	76%
RefSeq	Populus trichocarpa	XP_002318053.1	anion exchanger family protein, partial [Populus trichocarpa]	2.0e-29	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRN9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 95 aas, your sequence is shorter than subject: 70 - 671

Fln protein: RRDLGCHSFFTAPSRRYKEL*EYHATFLETVPFKTIATFTIFQTCYLLACFGITWVPIDGVLFPLLIML*

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTCACTGCTCCAAGCCGTAGATACAAAGAACTTTAGGAGTATCATGCTACATTTCTTGAAACGGTaCCTTTCAAGACAATTGCCACTTTCACCATTTTCCAGACATGTTATTTGCTGGCATGTTTTGGTATCACATGGGTGCCTATAGATGGTGTTCTCTTCCCACTACTAATCATGTTGTAACTT

Fln Alignment:

GG46A6U01CCLTE___FTAPSRRYKEL*EYHATFLETVPFKTIATFTIFQTCYLLACFGITWVPIDGVLFPLLIML
B8LRN9_______________FIAPTRRYKVLEDLHASFVETVPFKTIALFTIFQFIYLLSCFGVTWIPIAGILFPIPFFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain