SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69401

Length: 200 nt

UniGene Fasta

>sp_v3.0_unigene69401
CGTCGTGACCTTGGCTGTCACTCACAGATATTTTCACAGGGGAATCCACCTACAGTTTTCCAGTATCGGGTGGCAGGCATTGGGTGAGGCTTTATTTCTACCCATCTTCTTATAATGGTCTTGCCCCTGAAGATGCCTTCTTCACTGTTCGTGCCGGAGGCTACACCATGCTGAAGATTTCAGTGCATCGATCACTGCTC

Ace file of the UniGene sp_v3.0_unigene69401

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FERONIA receptor-like kinase [Cardamine flexuosa]	-	-	2.0e-08	55%
FL-Next	sp=Receptor-like protein kinase FERONIA; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%

Source	Gene names
Sma3	POPTRDRAFT_668221;

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G51550.1	FER Malectin/receptor-like protein kinase family protein chr3:19117877-19120564 REVERSE LENGTH=895	1.0e-11	53%
RefSeq	Arabidopsis thaliana	NP_190723.1	receptor-like protein kinase FERONIA [Arabidopsis thaliana]	2.0e-11	53%
RefSeq	Populus trichocarpa	XP_002323088.1	predicted protein [Populus trichocarpa]	8.0e-14	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SCZ4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 746 aas, your sequence is shorter than subject: 66 - 895

Fln protein: S*PWLSLTDIFTGESTYSFPVSGGRHWVRLYFYPSSYNGLAPEDAFFTVRAGGYTMLKISVHRSLL

Protein Length: 67

Fln nts: CGTCGTGACCTTGGCTGTCACTCACAGATATTTTCACAGGGGAATCCACCTACAGTTTTCCAGTATCGGGTGGCAGGCATTGGGTGAGGCTTTATTTCTACCCATCTTCTTATAATGGTCTTGCCCCTGAAGATGCCTTCTTCACTGTTCGTGCCGGAGGCTACACCATGCTGAAGATTTCAGTGCATCGATCACTGCTC

Fln Alignment:

GG46A6U01EM0HF___IFTGESTYSFPVSGGRHWVRLYFYPSSYNGLAPEDAFFTVRAGGYTMLK
Q9SCZ4_______________VFRSPFTYTFPVASGRKFVRLYFYPNSYDGLNATNSLFSVSFGPYTLLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain