SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69392

Length: 143 nt

UniGene Fasta

>sp_v3.0_unigene69392
CGTCGTGACCTTGGCTGTCACTCAAACTTATTCGTATCATCAAGAACCTTCGTATGTGTGTTGATTGCCACACTGCCACAAAGTTCATCTCCGAGTTAGTTCACCGAGAAATTATTATAAGGGATGCCAACAGGTTCCATTAC

Ace file of the UniGene sp_v3.0_unigene69392

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Sma3	Pentatricopeptide repeat protein	-	-	-

Source	Gene names
Sma3	At2g22070; At4g15720; B1080A02.28; FCAALL.369; GSVIVT00017181001; GSVIVT00019419001; GSVIVT00021165001; GSVIVT00026082001; GSVIVT00031076001; GSVIVT00032605001; GSVIVT00037988001; LOC_Os11g37330; LOC_Os12g01850; OJ1199_H01.113; OJ1359_D06.22; Os01g0355100

Source	GOs	Term	Type	e value	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	0.0	-
Sma3	DNA methylation	GO:0006306	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G30700.1	Pentatricopeptide repeat (PPR) superfamily protein chr4:14962617-14964995 REVERSE LENGTH=792	4.0e-13	68%
RefSeq	Arabidopsis thaliana	NP_194799.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	5.0e-13	68%
RefSeq	Populus trichocarpa	XP_002308660.1	predicted protein [Populus trichocarpa]	1.0e-13	66%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 47 - 246

Fln protein: S*PWLSLKLIRIIKNLRMCVDCHTATKFISELVHREIIIRDANRFHY

Protein Length: 48

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTTATTCGTATCATCAAGAACCTTCGTATGTGTGTTGATTGCCACACTGCCACAAAGTTCATCTCCGAGTTAGTTCACCGAGAAATTATTATAAGGGATGCCAACAGGTTCCATTAC

Fln Alignment:

GG46A6U01DIRST___IRIIKNLRMCVDCHTATKFISELVHREIIIRDANRFHY
D5AAE0_______________VRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFHH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain