SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69387

Length: 139 nt

UniGene Fasta

>sp_v3.0_unigene69387
CGTCGTGACCTTGGCTGTCACTCAGAGTATTTTGTATGCCTTAATGGGCACTTGCTTGGCGTCTGTACACTTTTACCACTCTCAGATTCTGAGACTGCATCAGAAGAAGATTAATATCTGAAACNGATTCTCTCCAAAC

Ace file of the UniGene sp_v3.0_unigene69387

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EID1-like F-box protein 2 [Arabidopsis thaliana] sp\|Q9FLZ8.1\|EDL2_ARATH RecName: Full=EID1-like F-box protein 2 dbj\|BAB11010.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL77680.1\| AT5g39360/MUL8_40 [Arabidopsis thaliana] gb\|AAM91462.1\| AT5g39360	-	-	1.0e-06	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	Emb\|CAB87751.1	-	-	6.335e-06	-

Source	Gene names
Sma3	At5g39360; POPTRDRAFT_778575; POPTRDRAFT_818049; RCOM_0524300; VITISV_009953;

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G39360.1	EDL2 EID1-like 2 chr5:15753313-15754062 REVERSE LENGTH=249	6.0e-11	88%
RefSeq	Arabidopsis thaliana	NP_198752.1	EID1-like F-box protein 2 [Arabidopsis thaliana]	7.0e-11	88%
RefSeq	Populus trichocarpa	XP_002306041.1	predicted protein [Populus trichocarpa]	7.0e-11	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8D4

Fln msg: your sequence is shorter than subject: 38 - 250

Fln protein: RRDLGCHSEYFVCLNGHLLGVCTLLPLSDSETASEED*

Protein Length: 39

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGTATTTTGTATGCCTTAATGGGCACTTGCTTGGCGTCTGTACACTTTTACCACTCTCAGATTCTGAGACTGCATCAGAAGAAGATTAA___TATCTGAAACaGATTCTCTCCAAAC

Fln Alignment:

GG46A6U01BI0MV___EYFVCLNGHLLGVCTLLPLSDSETASEED
D5A8D4_______________EYFVCLNGHLLGVCTLLPLSDSETASEED

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain