SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69360

Length: 210 nt

UniGene Fasta

>sp_v3.0_unigene69360
CGTCGTGACCTTGGCTGTCACTCAAAGGGGAGGAGATGTGACATTTCATGGACCACATCAGGCAATTTTGTATCCTATCATTTCTCTTAGAGAATCTGGACTTGGTGCTAGGAGGTAATGTGGAAAATTTAGAGGACACTATGATCAAATTAGCTTCTGTGTATGGGATTCAAGCTCAGCGTGGCATGAAAGGAGAAACTGGAGTTTGGG

Ace file of the UniGene sp_v3.0_unigene69360

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipoate-protein ligase B, putative n=1 Tax=Ricinus communis RepID=B9SJ07_RICCO	-	-	2.0e-15	76%
FL-Next	sp=Octanoyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	82%

Source	Gene names
Sma3	AT1G04640; At1g04640; GSVIVT00024702001; LIP2; LOC_Os03g20560; Os03g0321800; OsI_11351; OsJ_10659; POPTRDRAFT_639731; RCOM_0597510; T1G11.11; VITISV_030852;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	lipoyltransferase activity	GO:0017118	Molecular Function	-
Sma3	lipoyl(octanoyl) transferase activity	GO:0033819	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-
Sma3	lipoate biosynthetic process	GO:0009107	Biological Process	-
Sma3	protein lipoylation	GO:0009249	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Octanoyltransferase	IPR000544	-	0.0	-
Sma3	Biotin/lipoate A/B protein ligase	IPR004143	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G04640.1	LIP2 lipoyltransferase 2 chr1:1292541-1293248 FORWARD LENGTH=235	4.0e-17	82%
RefSeq	Arabidopsis thaliana	NP_001030961.1	lipoyl(octanoyl) transferase [Arabidopsis thaliana]	5.0e-17	82%
RefSeq	Populus trichocarpa	XP_002297668.1	predicted protein [Populus trichocarpa]	1.0e-13	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SXP7

Fln msg: Separated hits, possible frame ERROR between 112 and 120, Distance to subject end: 96 aas, your sequence is shorter than subject: 70 - 235

Fln protein: VVTLAVTQRGGDVTFHGPHQAILYPIISLRESGLGAxxxxVENLEDTMIKLASVYGIQAQRGMKGETGVW

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGGGGAGGAGATGTGACATTTCATGGACCACATCAGGCAATTTTGTATCCTATCATTTCTCTTAGAGAATCTGGACTTGGTGCTAGxxxxxxxxxTGTGGAAAATTTAGAGGACACTATGATCAAATTAGCTTCTGTGTATGGGATTCAAGCTCAGCGTGGCATGAAAGGAGAAACTGGAGTTTGGG

Fln Alignment:

GG46A6U01CAXMM___LAVTQRGGDVTFHGPHQAILYPIISLRESGLGARxxxVENLEDTMIKLASVYGIQAQRGMKGETGVW
Q9SXP7_______________LHYTQRGGDITFHGPHQAILYPIISLRSIGFGARxxxVETLERSMIEFASIYGVKARAGNKCETGVW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain