SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69269

Length: 172 nt

UniGene Fasta

>sp_v3.0_unigene69269
CGTCGTGACCTTGGCTGTCACTCAAAGATGTATGAAGATGGGTTTAAGAGTATGGCAACGCTAGTAGACGTTGGAGGAGGTATGGGCTCTGCCTTGTCCATCATTGTGAAGGAACATTCACACATTCGTGGGATTAATCTCGATCTGCCTCATGTCATTTGCCACTGCGCCT

Ace file of the UniGene sp_v3.0_unigene69269

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Caffeic acid O-methyltransferase (Fragment) n=1 Tax=Pinus pinaster RepID=Q9FEU5_PINPS	-	-	5.0e-18	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	Gene names
Sma3	cOMT;

Source	GOs	Term	Type	Identity
Sma3	O-methyltransferase activity	GO:0008171	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	caffeate O-methyltransferase activity	GO:0047763	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	O-methyltransferase, family 2	IPR001077	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Plant methyltransferase dimerisation	IPR012967	-	-
Sma3	O-methyltransferase, COMT, eukaryota	IPR016461	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002329411.1	alkaloid o-methyltransferase related [Populus trichocarpa]	2.0e-11	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NU35

Fln msg: Distance to subject end: 126 aas, your sequence is shorter than subject: 57 - 384

Fln protein: RRDLGCHSKMYEDGFKSMATLVDVGGGMGSALSIIVKEHSHIRGINLDLPHVICHCA

Protein Length: 58

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGATGTATGAAGATGGGTTTAAGAGTATGGCAACGCTAGTAGACGTTGGAGGAGGTATGGGCTCTGCCTTGTCCATCATTGTGAAGGAACATTCACACATTCGTGGGATTAATCTCGATCTGCCTCATGTCATTTGCCACTGCGCCT

Fln Alignment:

GG46A6U01CEP8J___SKMYEDGFKSMATLVDVGGGMGSALSIIVKEHSHIRGINLDLPHVI
A9NU35_______________AKMYEDGFESINTLVDVGGGMGSSLSMIVKEHSHIRGINFDLPHVI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain