SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69223

Length: 228 nt

UniGene Fasta

>sp_v3.0_unigene69223
CGTCGTGACCTTGGCTGTCACTCATGTCTGAACGATTTACCAGGGGATGCTTCTACAGAGAGGCGGGTTTTCTACAAGCTTATTTCAGGAATGCATTCTTCCATTTCAGCTCATATTGCTAAAGAATATCTACTAGACGAAGGAAAAAATTTATGGGGACCGAATCCACCTCTGCTCTATGAACGGGTGTTGAAACATCCTGACCGTGTCAGAAACTTGTACTTCACG

Ace file of the UniGene sp_v3.0_unigene69223

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	endoplasmic oxidoreductin-1 [Arabidopsis thaliana] sp\|Q9C7S7.1\|ERO1_ARATH RecName: Full=Endoplasmic oxidoreductin-1; Flags: Precursor gb\|AAG51798.1\|AC067754_14 disulfide bond formation protein, putative; 78451-75984 [Arabidopsis thaliana] gb\|AAP68213.1\| A	-	-	2.0e-18	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Endoplasmic oxidoreductin-1	-	-	4.755e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxidoreductases, Acting on a sulfur group of donors, With a disulfide as acceptor.	EC:1.8.4.-	-	4.755e-09	-

Source	Gene names
Sma3	AERO1; AERO2; At1g72280; At2g38960; ERO1; ERO2; GSVIVT00025811001; GSVIVT00028334001; LOC_Os03g52340; OSJNBa0027J18.20; Os03g0733800; OsI_13409; OsJ_12469; PHYPADRAFT_183236; PHYPADRAFT_23278; POPTRDRAFT_1070318; POPTRDRAFT_569143; RCOM_0229980; T7F6.13;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	GO:0016671	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	protein thiol-disulfide exchange	GO:0006467	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	electron transport chain	GO:0022900	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Endoplasmic reticulum oxidoreductin 1	IPR007266	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G72280.1	AERO1, ERO1 endoplasmic reticulum oxidoreductins 1 chr1:27212039-27214506 REVERSE LENGTH=469	7.0e-24	59%
RefSeq	Arabidopsis thaliana	NP_177372.1	endoplasmic oxidoreductin-1 [Arabidopsis thaliana]	9.0e-24	59%
RefSeq	Populus trichocarpa	XP_002317004.1	predicted protein [Populus trichocarpa]	6.0e-24	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR08

Fln msg: Distance to subject end: 169 aas, your sequence is shorter than subject: 76 - 342

Fln protein: RRDLGCHSCLNDLPGDASTERRVFYKLISGMHSSISAHIAKEYLLDEGKNLWGPNPPLLYERVLKHPDRVRNLYFT

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTCTGAACGATTTACCAGGGGATGCTTCTACAGAGAGGCGGGTTTTCTACAAGCTTATTTCAGGAATGCATTCTTCCATTTCAGCTCATATTGCTAAAGAATATCTACTAGACGAAGGAAAAAATTTATGGGGACCGAATCCACCTCTGCTCTATGAACGGGTGTTGAAACATCCTGACCGTGTCAGAAACTTGTACTTCACG

Fln Alignment:

GG46A6U01BS1IL___CLNDLPGDASTERRVFYKLISGMHSSISAHIAKEYLLDEGKNLWGPNPPLLYERVLKHPDRVRNLYFT
B8LR08_______________CLKDLPGDASTERRVLYKLISGMHSSISAHIAKEYLLDEGKNLWGPNPTLLYERVLKHPDRVRNLYFT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain