SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69212

Length: 201 nt

UniGene Fasta

>sp_v3.0_unigene69212
CGTCGTGACCTTGGCTGTCACTCATTCATCCGATGAGACATGCTGCTGTATATTTGAATTGTTCGATTATTGTCTGATTTATGGATGCTGCGAGCTCGAGAATGCCGTGTGCTGCACAGGTTCTATCTATTGTTGCCCAGAGGATTATCCCATTCTGTGATATTGAAGACGGCCTCTGTCTCCAGAGTGCTGATGATATTG

Ace file of the UniGene sp_v3.0_unigene69212

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cysteine protease Cp5 [Actinidia deliciosa]	-	-	1.0e-18	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	Gene names
Sma3	GSVIVT00035865001; POPTRDRAFT_713838; POPTRDRAFT_822940; POPTRDRAFT_822941; RCOM_0427860;

Source	GOs	Term	Type	e value	Identity
Sma3	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Granulin	IPR000118	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G09850.1	XBCP3 xylem bark cysteine peptidase 3 chr1:3201848-3203875 FORWARD LENGTH=437	2.0e-14	58%
RefSeq	Arabidopsis thaliana	NP_563855.1	xylem bark cysteine peptidase 3 [Arabidopsis thaliana]	3.0e-14	58%
RefSeq	Populus trichocarpa	XP_002317418.1	predicted protein [Populus trichocarpa]	9.0e-22	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV34

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 19 aas, your sequence is shorter than subject: 53 - 452

Fln protein: VVTLAVTHSSDETCCCIFELFDYCLIYGCCELENAVCCTGSIYCCPEDYPIL*

Protein Length: 54

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCATCCGATGAGACATGCTGCTGTATATTTGAATTGTTCGATTATTGTCTGATTTATGGATGCTGCGAGCTCGAGAATGCCGTGTGCTGCACAGGTTCTATCTATTGTTGCCCAGAGGATTATCCCATTCTGTGATATTGAAGACGGCCTCTGTCTCCAGAGTGCTGATGATATTG

Fln Alignment:

GG46A6U01DVD48___TCCCIFELFDYCLIYGCCELENAVCCTGSIYCCPEDYPI
A9NV34_______________TCCCMYDFGGYCYAWGCCPLDSATCCDDHYSCCPNEYPV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain