SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69164

Length: 206 nt

UniGene Fasta

>sp_v3.0_unigene69164
CGTCGTGACCTTGGCGTCACTCATTGCATTCTACTAGGCCTTTCATCATCCATGAAATCCAGCAATTAGCTGAACTGGCAGCACCTACTGTGGAGGCTGTTCGTGATATTAGTTTTGCATCACAGGTGATTGGAGATATGAGTGGGGCAGCTTCTTTGGATGACCTATTAGCTGATAGGTATTCTAAACTAGACTGCTCTATCATC

Ace file of the UniGene sp_v3.0_unigene69164

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Putative poly [ADP-ribose] polymerase 3; Short=PARP-3; AltName: Full=NAD(+) ADP-ribosyltransferase 3; Short=ADPRT-3; AltName: Full=Poly[ADP-ribose] synthase 3	-	-	1.0e-11	54%
FL-Next	sp=Putative poly [ADP-ribose] polymerase 3; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	54%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G22470.1	" NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases chr5:7447045-7450743 FORWARD LENGTH=814"	1.0e-14	53%
RefSeq	Arabidopsis thaliana	NP_197639.2	"NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferase [Arabidopsis thaliana]"	1.0e-14	53%
RefSeq	Populus trichocarpa	XP_002313672.1	predicted protein [Populus trichocarpa]	2.0e-14	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q1SGF1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 221 aas, your sequence is shorter than subject: 68 - 799

Fln protein: S*PWRHSLHSTRPFIIHEIQQLAELAAPTVEAVRDISFASQVIGDMSGAASLDDLLADRYSKLDCSII

Protein Length: 69

Fln nts: CGTCGTGACCTTGGCGTCACTCATTGCATTCTACTAGGCCTTTCATCATCCATGAAATCCAGCAATTAGCTGAACTGGCAGCACCTACTGTGGAGGCTGTTCGTGATATTAGTTTTGCATCACAGGTGATTGGAGATATGAGTGGGGCAGCTTCTTTGGATGACCTATTAGCTGATAGGTATTCTAAACTAGACTGCTCTATCATC

Fln Alignment:

GG46A6U01DAMMR___WRHSLHSTRPFIIHEIQQLAELAAPTVEAVRDISFASQVIGDMSGAASLDDLLADRYSKLDCSI
Q1SGF1_______________WFTLMHSTRPFIFRDYQEIADHAAAALEGVRDITLASHLIGDMSG-STIDDPLSDTYKKLGCSI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain