SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69162

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene69162
CGTCGTGACCTTGGCTGTCACTCTGTACGGTTTGATAGCATCACAGTTTGGGGATTATGAAAATCTCATGACTAAAACAGACGGCACTAAAGAGCCATTGAAACAGTTTATCAAAAGTTATTTTGGATTCAGACACAGCTTCTTGGGACCTGTTGCAGTTGTGACAGCAGGATGGAGCATTCTCTTCGCATTCATCTTTGCCATATCCATCAAAAAGCTCAACTTCCAGTCAAGATAGTCACTGAAAT

Ace file of the UniGene sp_v3.0_unigene69162

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter-like protein (Fragment) n=3 Tax=Picea sitchensis RepID=E0ZJK5_PICSI	-	-	2.0e-19	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	Gene names
Sma3	GSVIVT00034504001; LOC_Os01g42370; LOC_Os02g11760; OJ1003_F05.29-1; OJ1006_A02.12-1; Os01g0609200; Os02g0208300; OsI_002763; OsI_02807; OsI_02808; OsI_06321; OsJ_02559; OsJ_02561; OsJ_05840; P0410E03.7; PDR11; PDR2; PDR3; PDR7; PDR9; RCOM_1053600;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002297805.1	predicted protein [Populus trichocarpa]	4.0e-12	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACV1

Fln msg: your sequence is shorter than subject: 79 - 412

Fln protein: VVTLAVTLYGLIASQFGDYENLMTKTDGTKEPLKQFIKSYFGFRHSFLGPVAVVTAGWSILFAFIFAISIKKLNFQSR*

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCTGTACGGTTTGATAGCATCACAGTTTGGGGATTATGAAAATCTCATGACTAAAACAGACGGCACTAAAGAGCCATTGAAACAGTTTATCAAAAGTTATTTTGGATTCAGACACAGCTTCTTGGGACCTGTTGCAGTTGTGACAGCAGGATGGAGCATTCTCTTCGCATTCATCTTTGCCATATCCATCAAAAAGCTCAACTTCCAGTCAAGATAG___TCACTGAAAT

Fln Alignment:

GG46A6U01DGST3___LAVTLYGLIASQFGDYENLMTKTDGTKEPL--KQFIKSYFGFRHSFLGPVAVVTAGWXXXXXXXXXXXXXXXNFQSR
D5ACV1_______________VAWTLYGLITSQLGDLTGFV-EVAGEKDTMSVQQFLEGYFGYRHDFLGVVAAVHVGIVILFFSVFAFGIKYLNFQRR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain