SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69148

Length: 137 nt

UniGene Fasta

>sp_v3.0_unigene69148
CGTCGTGACCTTGGCTGTCACTCATCTGGGCGGAGCTGCTCCTTACTCCTACACAGCATCGAAGCATGCAATCCTTGGATTGACTAAAAATGGTGCAGCTGAGCTTGGAAAATACGGAATCAGAGTGAACACTGTTT

Ace file of the UniGene sp_v3.0_unigene69148

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] emb\|CAB63154.1\| short-chain alcohol dehydrogenase-like protein [Arabidopsis thaliana] gb\|AEE78826.1\| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana	-	-	1.0e-08	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Tasselseed2-like short-chain dehydrogenase/reductase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.1.1.10-	-	4.464e-10	-

Source	Gene names
Sma3	At3g51680; GSVIVT00023991001; GSVIVT00037295001; GSVIVT00037431001; LOC_Os03g18740; LOC_Os03g59610; OSJNBa0028F23.5; OSJNBb0033J23.3; Os03g0299200; Os03g0810800; OsI_11179; OsI_14018; OsJ_10511; OsJ_13064; POPTRDRAFT_560966; POPTRDRAFT_577103; RCOM_015678

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	immune response	GO:0006955	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	2-5-oligoadenylate synthetase, N-terminal	IPR006116	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein chr3:19173622-19174667 REVERSE LENGTH=303	3.0e-13	72%
RefSeq	Arabidopsis thaliana	NP_190736.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	3.0e-13	72%
RefSeq	Populus trichocarpa	XP_002323034.1	predicted protein [Populus trichocarpa]	2.0e-12	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUM5

Fln msg: Distance to subject end: 87 aas, your sequence is shorter than subject: 45 - 291

Fln protein: VVTLAVTHLGGAAPYSYTASKHAILGLTKNGAAELGKYGIRVNTV

Protein Length: 46

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTGGGCGGAGCTGCTCCTTACTCCTACACAGCATCGAAGCATGCAATCCTTGGATTGACTAAAAATGGTGCAGCTGAGCTTGGAAAATACGGAATCAGAGTGAACACTGTTT

Fln Alignment:

GG46A6U01ESSXX___LGGAAPYSYTASKHAILGLTKNGAAELGKYGIRVNTV
A9NUM5_______________LGGLTPYAYTASKHAILGLTKNGAAELGKYGIRVNTV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain