SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69134

Length: 297 nt

UniGene Fasta

>sp_v3.0_unigene69134
CGTCGTGACCTTGGCTGTCACTCATGGTACTTCGGTAATGGCTCTGGTGCTAGTGCTGCTCCTGTTGGGCGTCAGTGTTAATGCTCAAAACTGTGGCTGTGCCAGCAGTCTTTGTTGCAGCAAGTATGGATACTGCGGGACGACCACCGCCTACTGCGGCGAGGGCTGCCAGGGCGGCCCCTGTACAAGCTCAGGTGGAGGATCTCCTATTACCGGAGGTGGAAACGTGGGCACCATAATTTCCCAGAGTGTCTTCGATGGCCTTGCGGGCGAGCTGCCAGCTCCTGCGAAGGCAAA

Ace file of the UniGene sp_v3.0_unigene69134

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Class IV chitinase n=7 Tax=Pinaceae RepID=C3VP99_PSEMZ	-	-	8.0e-14	51%
FL-Next	tr=Class IV chitinase; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	0.0	81%
Sma3	Class IV chitinase	-	-	1.433e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Chitinase.	EC:3.2.1.14	-	1.13e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Amino sugar and nucleotide sugar metabolism	00520		1.13e-08	%

Source	Gene names
Sma3	At2g43570; Bcchi; CHB4; CHI4; Ch4A; Chi4; Chi4D; Cht; GSVIVT00034642001; GSVIVT00034646001; LSC222; NaCHIT1; VITISV_033131; chi; chiA; chiB; cjp-4;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	chitinase activity	GO:0004568	Molecular Function	-
Sma3	chitin binding	GO:0008061	Molecular Function	-
Sma3	polysaccharide catabolic process	GO:0000272	Biological Process	-
Sma3	chitin catabolic process	GO:0006032	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-
Sma3	Chitin-binding, type 1	IPR001002	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Glycoside hydrolase, family 19	IPR016283	-	-
Sma3	Chitin-binding, type 1, conserved site	IPR018371	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G43570.1	CHI chitinase, putative chr2:18076389-18077435 REVERSE LENGTH=277	6.0e-11	77%
RefSeq	Arabidopsis thaliana	NP_181885.1	chitinase class 4-like protein [Arabidopsis thaliana]	7.0e-11	77%
RefSeq	Populus trichocarpa	XP_002326041.1	predicted protein [Populus trichocarpa]	2.0e-12	52%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C3VPA0

Fln msg: Distance to subject end: 179 aas, your sequence is shorter than subject: 86 - 276

Fln protein: MALVLVLLLLGVSVNAQNCGCASSLCCSKYGYCGTTTAYCGEGCQGGPCTSSGGGSPITGGGNVGTIISQSVFDGLAGELPAPAKA

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGTACTTCGGTA_-_ATGGCTCTGGTGCTAGTGCTGCTCCTGTTGGGCGTCAGTGTTAATGCTCAAAACTGTGGCTGTGCCAGCAGTCTTTGTTGCAGCAAGTATGGATACTGCGGGACGACCACCGCCTACTGCGGCGAGGGCTGCCAGGGCGGCCCCTGTACAAGCTCAGGTGGAGGATCTCCTATTACCGGAGGTGGAAACGTGGGCACCATAATTTCCCAGAGTGTCTTCGATGGCCTTGCGGGCGAGCTGCCAGCTCCTGCGAAGGCAAA

Fln Alignment:

GG46A6U01CLMHI___NAQNCGCASSLCCSKYGYCGTTTAYCGEXXXXXXXXXXXXXXXXXXXXNVGTIISQSVFDGLAG
C3VPA0_______________NAQNCGCASGLCCSKYGYCGTTSAYCGTGCQSGPCSSSSGGSPSGGGGSVGTIISESIFNGLAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain