SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69125

Length: 237 nt

UniGene Fasta

>sp_v3.0_unigene69125
CGTCGTGACCTTGGCTGTCACTCAAGAATGCCTGAACGAAATACCGTGTCGTGGAATGCGATGATCGCTGGATACGCACAACATGGGCATGGGAAGGAGGCTCTGAAGTTGTTTCTAGAGATGCAGCAGGCTGGGATGAGACCAGATTACATTACTTTTGTGAGTCTAATAAGTGCATGTGCTTGCTTTGCACTTCTGGAACAGGGCCGGCAGGTACATGGCCACATGATTGTGGCC

Ace file of the UniGene sp_v3.0_unigene69125

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RRD9_RICCO	-	-	7.0e-16	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%

Source	Gene names
Sma3	At5g09950; GSVIVT00015531001; GSVIVT00017804001; GSVIVT00037937001; MYH9.16; PCMP-H35; PHYPADRAFT_224041; POPTRDRAFT_757075; VITISV_031846;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G68930.1	pentatricopeptide (PPR) repeat-containing protein chr1:25918314-25920545 FORWARD LENGTH=743	7.0e-18	49%
RefSeq	Arabidopsis thaliana	NP_177059.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	9.0e-18	49%
RefSeq	Populus trichocarpa	XP_002318193.1	predicted protein [Populus trichocarpa]	2.0e-18	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 248 aas, your sequence is shorter than subject: 79 - 795

Fln protein: RRDLGCHSRMPERNTVSWNAMIAGYAQHGHGKEALKLFLEMQQAGMRPDYITFVSLISACACFALLEQGRQVHGHMIVA

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAATGCCTGAACGAAATACCGTGTCGTGGAATGCGATGATCGCTGGATACGCACAACATGGGCATGGGAAGGAGGCTCTGAAGTTGTTTCTAGAGATGCAGCAGGCTGGGATGAGACCAGATTACATTACTTTTGTGAGTCTAATAAGTGCATGTGCTTGCTTTGCACTTCTGGAACAGGGCCGGCAGGTACATGGCCACATGATTGTGGCC

Fln Alignment:

GG46A6U01CXJWH___RMPERNTVSWNAMIAGYAQHGHGKEALKLFLEMQQAGMRPDYITFVSLISACACFALLEQGRQVHGHMI
B8LQA8_______________RMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain