SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69117

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene69117
CGTCGTGACCTTGGCTGTCACTCAGTGGAAAAGCATAGAGCGGAGGGAATACCTGTGTTTGTTATGCTCCCTCTGGATAGCATAACCCATAACAACACCGTCAATAGACGGAAGGCTATGAATGCCAGTCTTCAGGCCTTGAAGAGTGCTGGTGTTGAGGGAGTTATGATGGATGTTTGGTGGGGTCTTGTTGAACGAGAGGCTCCAGGGCAGTATAACTGGTCTGGATACAGA

Ace file of the UniGene sp_v3.0_unigene69117

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-amylase n=1 Tax=Populus trichocarpa RepID=B9HKX1_POPTR	-	-	6.0e-25	78%
FL-Next	sp=Beta-amylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Beta-amylase	-	-	4.303e-36	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-amylase.	EC:3.2.1.2	-	5.1848e-43	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		5.1848e-43	%
Sma3	Metabolic pathways	01100		5.1848e-43	%

Source	Gene names
Sma3	AT4g17090; At3g23920; At4g17090; BAM1; GSVIVT00015861001; GSVIVT00020394001; GSVIVT00020399001; LOC_Os03g04770; LOC_Os10g32810; OSJNBa0006L06.1; Os03g0141200; Os10g0465700; OsI_09956; OsI_33946; OsJ_09355; OsJ_31822; PHYPADRAFT_118142; PHYPADRAFT_187470;

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	beta-amylase activity	GO:0016161	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	maltose biosynthetic process	GO:0000024	Biological Process	-
Sma3	polysaccharide catabolic process	GO:0000272	Biological Process	-
Sma3	starch catabolic process	GO:0005983	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G23920.1	BAM1, BMY7, TR-BAMY beta-amylase 1 chr3:8641722-8644199 FORWARD LENGTH=575	3.0e-31	75%
RefSeq	Arabidopsis thaliana	NP_189034.1	beta-amylase 1 [Arabidopsis thaliana]	4.0e-31	75%
RefSeq	Populus trichocarpa	XP_002311706.1	predicted protein [Populus trichocarpa]	9.0e-32	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVE4

Fln msg: Distance to subject end: 398 aas, your sequence is shorter than subject: 78 - 492

Fln protein: RRDLGCHSVEKHRAEGIPVFVMLPLDSITHNNTVNRRKAMNASLQALKSAGVEGVMMDVWWGLVEREAPGQYNWSGYR

Protein Length: 79

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGGAAAAGCATAGAGCGGAGGGAATACCTGTGTTTGTTATGCTCCCTCTGGATAGCATAACCCATAACAACACCGTCAATAGACGGAAGGCTATGAATGCCAGTCTTCAGGCCTTGAAGAGTGCTGGTGTTGAGGGAGTTATGATGGATGTTTGGTGGGGTCTTGTTGAACGAGAGGCTCCAGGGCAGTATAACTGGTCTGGATACAGA

Fln Alignment:

GG46A6U01EL1ML___GIPVFVMLPLDSITHNNTVNRRKAMNASLQALKSAGVEGVMMDVWWGLVEREAPGQYNWSGYR
A9NVE4_______________GVPVFVKLPLDSVTSKHTVNRRKAMDASLMALKSAGVEGVMVNVWWGLVEREAPGEYNWSAYR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain