UniGene Name: sp_v3.0_unigene69016
Length: 243 nt
UniGene Fasta |
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>sp_v3.0_unigene69016
C |
Ace file of the UniGene sp_v3.0_unigene69016 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | AP2-like ethylene-responsive transcription factor PLT2 n=2 Tax=Arabidopsis RepID=PLET2_ARATH | - | - | 6.0e-21 | 87% |
FL-Next | tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). | - | - | 0.0 | 83% |
Sma3 | AP2 domain-containing transcription factor | - | - | 0.0 | - |
Source | Gene names |
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Sma3 | 117M18_31; AIL1; AIL3; AIL4; AIL5; AIL6; AIL7; AP2D14; AP2LP; At1g51190; At1g72570; At2g41710; At3g20840; At5g10510; At5g17430; At5g57390; At5g65510; BBM; BBM1; BBM2; BNM3; BcAP2; CrANTL1; F11M15.6; F12B17.140; F28P22.24; GSVIVT00011815001; GSVIVT00017130 |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | sequence-specific DNA binding transcription factor activity | GO:0003700 | Molecular Function | 0.0 | - |
Sma3 | regulation of transcription, DNA-dependent | GO:0006355 | Biological Process | 0.0 | - |
Sma3 | response to stress | GO:0006950 | Biological Process | 0.0 | - |
Sma3 | multicellular organismal development | GO:0007275 | Biological Process | 0.0 | - |
Sma3 | pattern specification process | GO:0007389 | Biological Process | 0.0 | - |
Sma3 | auxin mediated signaling pathway | GO:0009734 | Biological Process | 0.0 | - |
Sma3 | seed germination | GO:0009845 | Biological Process | 0.0 | - |
Sma3 | ethylene mediated signaling pathway | GO:0009873 | Biological Process | 0.0 | - |
Sma3 | stem cell maintenance | GO:0019827 | Biological Process | 0.0 | - |
Sma3 | root development | GO:0048364 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | IPR000173 | - | 0.0 | - | |
Sma3 | AP2/ERF domain | IPR001471 | - | 0.0 | - |
Sma3 | PRELI/MSF1 | IPR006797 | - | 0.0 | - |
Sma3 | DNA topoisomerase, type IIA, conserved site | IPR018522 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT1G51190.1 | PLT2 Integrase-type DNA-binding superfamily protein chr1:18977517-18980305 FORWARD LENGTH=568 | 2.0e-23 | 87% |
RefSeq | Arabidopsis thaliana | NP_175530.2 | AP2-like ethylene-responsive transcription factor PLT2 [Arabidopsis thaliana] | 3.0e-23 | 87% |
RefSeq | Populus trichocarpa | XP_002329654.1 | AP2 domain-containing transcription factor [Populus trichocarpa] | 8.0e-20 | 87% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: Q76H96
Fln msg: Overlapping hits, possible frame ERROR between 130 and 129, and overlapping frame ERROR between 194 and 172, Distance to subject end: 370 aas, your sequence is shorter than subject: 82 - 606
Fln protein:
V
Protein Length:
83
Fln nts:
C
Fln Alignment:
GG46A6U01B55AP___TSIYRGVTRHRWTGRYEAHLWDNTSRRENxTRKGRQVYLGGYDxxxxxxxxYDMAALKYWGPRTTTN
Q76H96_______________TSQYRGVTRHRWTGRYEAHLWDNSCRKEGxTRKGRQVYLGGYDxxxxxxxxYDLAALKYWGPSTHIN
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain