SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69006

Length: 180 nt

UniGene Fasta

>sp_v3.0_unigene69006
CGTCGTGACCTTGGCTGTCACTCATCTTTCTCTGTTTGTTCTGGGTCGGAACTGTGGATCAAGTCGGATTTCACCACAGAGGCAGTTTACTGAGTTTAGCTAATCTTCCTGTAGCAATCGGTCTTTATGGATATTGCTACTCTGGTCATGGCAGTTTTCCCAAACATATTATACATCTAT

Ace file of the UniGene sp_v3.0_unigene69006

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transmembrane amino acid transporter family protein [Arabidopsis thaliana] gb\|AEE79297.1\| Transmembrane amino acid transporter family protein [Arabidopsis thaliana]	-	-	5.0e-14	70%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	74%
Sma3	Putative uncharacterized protein At2g39130	-	-	3.954e-09	-

Source	Gene names
Sma3	At2g39130; At3g09330; B1370C05.10-1; F28P10.190; F3L24.20; F3L24.21; GSVIVT00018153001; Os02g0101000; OsI_05452; OsJ_04987; POPTRDRAFT_228075; POPTRDRAFT_720699; RCOM_0451890; RCOM_0481560;

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54830.1	Transmembrane amino acid transporter family protein chr3:20311901-20315030 REVERSE LENGTH=546	7.0e-19	70%
RefSeq	Arabidopsis thaliana	NP_191043.2	Transmembrane amino acid transporter family protein [Arabidopsis thaliana]	9.0e-19	70%
RefSeq	Populus trichocarpa	XP_002316384.1	amino acid transporter, partial [Populus trichocarpa]	4.0e-18	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HND9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 192 aas, your sequence is shorter than subject: 59 - 563

Fln protein: S*PWLSLIFLCLFWVGTVDQVGFHHRGSLLSLANLPVAIGLYGYCYSGHGSFPKHIIHL

Protein Length: 60

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTTCTCTGTTTGTTCTGGGTCGGAACTGTGGATCAAGTCGGATTTCACCACAGAGGCAGTTTACTGAGTTTAGCTAATCTTCCTGTAGCAATCGGTCTTTATGGATATTGCTACTCTGGTCATGGCAGTTTTCCCAAACATATTATACATCTAT

Fln Alignment:

GG46A6U01DC6FJ___LIFLCLFWVGTVDQVGFHHRGSLLSLANLPVAIGLYGYCYSGHGSFP
F6HND9_______________LVVLCLFWVGLVDQVGFQSEGTVLNLTNLPVAIGLYGYCYSGHAVFP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain