SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69004

Length: 240 nt

UniGene Fasta

>sp_v3.0_unigene69004
CGTCGTGACCTTGGCTGTCACTCATAATGGGTTGACAGGTTCTATTCCATCAAATAAGCTTTCCTCAAACATTACTACCATTGATCTATCGTATAATAAACTTAACGGATCGATACCGTCAAGACTTTGCAGGCTTGCCTTTACTCCAAAAATTATCACTTGATAACAATCAGTTGACTGGTTCTGCTCCATCTGACATTGGCTTGAATATCTCTTTCAATTCGACTGCAAGACTATTTC

Ace file of the UniGene sp_v3.0_unigene69004

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] gb\|AED90413.1\| leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	-	-	5.0e-10	56%
FL-Next	sp=Probable LRR receptor-like serine/threonine-protein kinase At5g37450; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%

Source	Gene names
Sma3	GSVIVT00033653001; Os01g0818700; OsI_04218; OsJ_03881;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G01950.1	Leucine-rich repeat protein kinase family protein chr5:365040-369532 REVERSE LENGTH=951	3.0e-12	56%
RefSeq	Arabidopsis thaliana	NP_195815.3	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	4.0e-12	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: C0LGU1

Fln msg: Overlapping hits, possible frame ERROR between 136 and 123, Distance to subject end: 610 aas, your sequence is shorter than subject: 80 - 959

Fln protein: VVTLAVTHNGLTGSIPSNKLSSNITTIDLSYNKLNGSIPSxxxxxxPLLQKLSLDNNQLTGSAPSDIGLNISFNSTARLF

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCATAATGGGTTGACAGGTTCTATTCCATCAAATAAGCTTTCCTCAAACATTACTACCATTGATCTATCGTATAATAAACTTAACGGATCGATACCGTCAxxxxxxxxxxxxxxxxxxCCTTTACTCCAAAAATTATCACTTGATAACAATCAGTTGACTGGTTCTGCTCCATCTGACATTGGCTTGAATATCTCTTTCAATTCGACTGCAAGACTATTTC

Fln Alignment:

GG46A6U01DGV7A___LAVTHNGLTGSIPSNKLSSNITTIDLSYNKLNGSIPSxxxxxPLLQKLSLDNNQLTGSAP
C0LGU1_______________LDISSNKLTGEIPKNKFSANITTINLYNNLLSGSIPSxxxxxPRLQRLQVQNNNLSGEIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain