SustainPineDB

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Assembly info
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SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68982

Length: 232 nt

UniGene Fasta

>sp_v3.0_unigene68982
CGTCGTGACCTTGGCTGTCACTCAAAGGGGAAGATTCCAAAGAAAAGGTTTAACATGAGGCTTGCACCTGAGGAGGTGGCATGTGAATTAACAGGCTATGTGCATAATGCTGTAACACCAATTGGCATGAAGACAGATATTCCTGTGATTCTCTCAGATGCTATTGTTAAACTGAAGCCAGATTATTTTTGGCTTGGTGGAGGGAGGTAGATGTGAAACTGGGAATCAAAAC

Ace file of the UniGene sp_v3.0_unigene68982

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein [Arabidopsis thaliana] gb\|AAK96788.1\| Unknown protein [Arabidopsis thaliana] gb\|AAL66934.1\| unknown protein [Arabidopsis thaliana] gb\|AEE83762.1\| YbaK/aminoacyl-tRNA synthetase-associated	-	-	3.0e-20	73%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	78%

Source	Gene names
Sma3	At4g16510; GSVIVT00009617001; MICPUN_101645; OJ1001_D02.5; Os02g0662200; OsI_08368; OsJ_07829; P0516F12.23; PHYPADRAFT_117069; POPTRDRAFT_799860; RCOM_0540820; Z97341.16;

Source	GOs	Term	Type	e value	Identity
Sma3	aminoacyl-tRNA ligase activity	GO:0004812	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	YbaK/aminoacyl-tRNA synthetase-associated domain	IPR007214	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G16510.1	YbaK/aminoacyl-tRNA synthetase-associated domain chr4:9302816-9304869 FORWARD LENGTH=232	5.0e-27	73%
RefSeq	Arabidopsis thaliana	NP_567502.1	YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein [Arabidopsis thaliana]	6.0e-27	73%
RefSeq	Populus trichocarpa	XP_002304420.1	predicted protein [Populus trichocarpa]	2.0e-25	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8SQH8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 20 aas, your sequence is shorter than subject: 70 - 227

Fln protein: RRDLGCHSKGKIPKKRFNMRLAPEEVACELTGYVHNAVTPIGMKTDIPVILSDAIVKLKPDYFWLGGGR*

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGGGGAAGATTCCAAAGAAAAGGTTTAACATGAGGCTTGCACCTGAGGAGGTGGCATGTGAATTAACAGGCTATGTGCATAATGCTGTAACACCAATTGGCATGAAGACAGATATTCCTGTGATTCTCTCAGATGCTATTGTTAAACTGAAGCCAGATTATTTTTGGCTTGGTGGAGGGAGGTAGATGTGAAACTGGGAATCAAAAC

Fln Alignment:

GG46A6U01B9BKE___SKGKIPKKRFNMRLAPEEVACELTGYVHNAVTPIGMKTDIPVILSDAIVKLKPDYFWLGGG
D8SQH8_______________NEGKIPKKRFNLRLAPEEESQRLSGYEHNAVTPIGMRTDIPVILSDAIANLKPDFFWLGGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain