SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68973

Length: 252 nt

UniGene Fasta

>sp_v3.0_unigene68973
CGTCGTGACCTTGGCTGTCACTCATCATTTCATCAGCTTTTTATTCTGGATGGAATCTCTTCTGTGGTTTCATTATCCCTCGACCAAAAATGCCCGCATGGTGGAGATGGTACACCTGGGCAACCCCTGTTTCTTGGACGCTCTATGGTCTGATTGCTTCACAGTTGGGTNATGTAGAAACNGAGATGGAGACAACAGAGGGGAAAGTGAAGGTGGCCAGATTCATACAATCTTATTCGGGATGAGACACGA

Ace file of the UniGene sp_v3.0_unigene68973

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PDR-like ABC-transporter n=1 Tax=Glycine max RepID=Q1M2R7_SOYBN	-	-	2.0e-18	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	ATP-binding cassette transporter, putative	-	-	5.501e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	4.596e-10	-
Sma3	Heme-transporting ATPase.	EC:3.6.3.41	-	2.013e-06	-

Source	Gene names
Sma3	At1g66950; At2g36380; B1045F02.15; B1090H08.39; F1O11.1; F1O19.3; GSVIVT00032575001; GSVIVT00034319001; LOC_Os01g08260; LOC_Os01g42370; LOC_Os01g42410; LOC_Os01g52560; LOC_Os02g11760; LOC_Os07g33780; NtPDR2; OJ1003_F05.29-1; OJ1006_A02.12-1; OJ1134_B09.15

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15520.1	PDR12, ATPDR12, ABCG40, ATABCG40 pleiotropic drug resistance 12 chr1:5331993-5338175 REVERSE LENGTH=1423	5.0e-21	68%
RefSeq	Arabidopsis thaliana	NP_173005.1	ABC transporter G family member 40 [Arabidopsis thaliana]	7.0e-21	68%
RefSeq	Populus trichocarpa	XP_002303856.1	predicted protein [Populus trichocarpa]	2.0e-22	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACV1

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 33 aas, your sequence is shorter than subject: 81 - 412

Fln protein: S*PWLSLIISSAFYSGWNLFCGFIIPRPKMPAWWRWYTWATPVSWTLYGLIASQLGNVETEMETTEGKVKVARFIQSYSG*

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCATTTCATCAGCTTTTTATTCTGGATGGAATCTCTTCTGTGGTTTCATTATCCCTCGACCAAAAATGCCCGCATGGTGGAGATGGTACACCTGGGCAACCCCTGTTTCTTGGACGCTCTATGGTCTGATTGCTTCACAGTTGGGTaATGTAGAAACcGAGATGGAGACAACAGAGGGGAAAGTGAAGGTGGCCAGATTCATACAATCTTATTCGGGATGAGACACGA

Fln Alignment:

GG46A6U01DDAWF___LSLIISSAFYSGWNLFCGFIIPRPKMPAWWRWYTWATPVSWTLYGLIASQLGNVETEMETTEGK--VKVARFIQSYSG
D5ACV1_______________IAAIVSSFFYGFWNIFSGFLITRPQIPVWWRWYYWANPVAWTLYGLITSQLGDLTGFVEVAGEKDTMSVQQFLEGYFG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain