SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68934

Length: 225 nt

UniGene Fasta

>sp_v3.0_unigene68934
CGTCGTGACCTTGGCTGTCACTCATTTAGTGGCAGCCTTATCATTTCACCAATTTTTTGAAGGAATGGGTCTTGGTGGATGCATCGTTCAGGCGGGTTTCAAGAATAAGTCGGCTGCGGTTATCCTGATGACGTTTTTCTTGCTGTGACAACGCCCTTTGGTATTGCATTGGGAATTGGGATCTCATCGGCTTACAACGAGAACAGCCCCAGGCCCTGATCATTG

Ace file of the UniGene sp_v3.0_unigene68934

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	metal transport protein [Medicago truncatula]	-	-	2.0e-11	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	ZIP-like zinc transporter	-	-	8.35e-09	-

Source	Gene names
Sma3	GSVIVT00030116001; GSVIVT00030117001; GSVIVT00037540001; OJ1734_E04.11; OSJNBa0007C23.6; OSJNBa0027N19.9; OSJNBa0070C17.15; Os04g0613000; Os05g0164800; Os05g0198400; Os08g0207500; OsI_17359; OsI_18587; OsI_18796; OsI_23408; OsI_28231; OsJ_16134; OsJ_17248

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	zinc ion transmembrane transporter activity	GO:0005385	Molecular Function	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	zinc ion transport	GO:0006829	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc/iron permease	IPR003689	-	0.0	-
Sma3	Zinc/iron permease, fungal/plant	IPR004698	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G19690.2	-	1.0e-11	69%
RefSeq	Arabidopsis thaliana	NP_567590.3	Fe(2+) transport protein 1 [Arabidopsis thaliana]	1.0e-11	69%
RefSeq	Populus trichocarpa	XP_002315075.1	ZIP transporter [Populus trichocarpa]	5.0e-14	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AE89

Fln msg: Separated hits, possible frame ERROR between 136 and 142, Unexpected STOP codon at 3' end. Distance to subject end: 58 aas, your sequence is shorter than subject: 73 - 369

Fln protein: VVTLAVTHLVAALSFHQFFEGMGLGGCIVQAGFKNKSAAVILMTxxxAVTTPFGIALGIGISSAYNENSPRP*

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTAGTGGCAGCCTTATCATTTCACCAATTTTTTGAAGGAATGGGTCTTGGTGGATGCATCGTTCAGGCGGGTTTCAAGAATAAGTCGGCTGCGGTTATCCTGATGACGTTxxxxxxTGCTGTGACAACGCCCTTTGGTATTGCATTGGGAATTGGGATCTCATCGGCTTACAACGAGAACAGCCCCAGGCCCTGATCATTG

Fln Alignment:

GG46A6U01DLJPV___SFHQFFEGMGLGGCIVQAGFKNKSAAVILMTFxxAVTTPFGIALGIGISSAYNENSPR
D5AE89_______________TFHQFFEGLALGGCVSQASFKSLYAFFMACLFxxAITTPACIAIGTGVSSISNPNEPR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain