SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68898

Length: 216 nt

UniGene Fasta

>sp_v3.0_unigene68898
CGTCGTGACCTTGGCTGTCACTCATTATTGTGGATCCCTTGCTTATACTTGAAAGGTACTTATGGAGAGGGGGACATAAATTTGCAATTGCACAGCATAAGCATCATCGAAGTATTTATGAAGAAGCAGATGCTAACAAACGAAGGAAGCGGTATGCAAGACCATTGATTGATTTGCACATGAAAATATATCGCTATGAAGGAATGGAGCCTTGGA

Ace file of the UniGene sp_v3.0_unigene68898

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF616 domain containing protein	-	-	3.0e-28	51%
FL-Next	tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	90%

Source	Gene names
Sma3	AT4g38500; At4g38500; F20M13.60; GSVIVT00036164001; Os06g0724300; OsI_24500; OsJ_22695; P0535F09.34; P0548E04.1; PHYPADRAFT_216814; POPTRDRAFT_557052; POPTRDRAFT_800871; RCOM_0977300; VITISV_038566;

Source	GOs	Term	Type	e value	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	0.0	-
Sma3	Protein of unknown function DUF616	IPR006852	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G38500.1	Protein of unknown function (DUF616) chr4:18008418-18010693 FORWARD LENGTH=499	4.0e-36	89%
RefSeq	Arabidopsis thaliana	NP_568044.1	uncharacterized protein [Arabidopsis thaliana]	5.0e-36	89%
RefSeq	Populus trichocarpa	XP_002312945.1	predicted protein [Populus trichocarpa]	9.0e-35	89%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: G7LIM8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 131 aas, your sequence is shorter than subject: 71 - 493

Fln protein: S*PWLSLIIVDPLLILERYLWRGGHKFAIAQHKHHRSIYEEADANKRRKRYARPLIDLHMKIYRYEGMEPW

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTATTGTGGATCCCTTGCTTATACTTGAAAGGTACTTATGGAGAGGGGGACATAAATTTGCAATTGCACAGCATAAGCATCATCGAAGTATTTATGAAGAAGCAGATGCTAACAAACGAAGGAAGCGGTATGCAAGACCATTGATTGATTTGCACATGAAAATATATCGCTATGAAGGAATGGAGCCTTGGA

Fln Alignment:

GG46A6U01B46YV___IIVDPLLILERYLWRGGHKFAIAQHKHHRSIYEEADANKRRKRYARPLIDLHMKIYRYEGMEPW
G7LIM8_______________LVVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADANKRRKRYARPLIDLHMKIYYYEGMKPW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain