SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68878

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene68878
CGTCGTGACCTTGGCTGTCACTCATGTTTTGCTGCTTGTGGTTCAACGAGGTTAACCTGTTGACACCACGAGATCAGCTTAGTTTTGGCTATGTTGTATATAGGTTGAATGGATCATTTCCATTTTTTATGTTCCCCAACTGTGAATATAATTCATTATTCATCTTACATAAACACACCCGTGAGCACTCGTCTAAAATTGAATGGGTGAAGTCAACAGATGAGTTTAAAGGCAATGGCAGCGTAATG

Ace file of the UniGene sp_v3.0_unigene68878

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF616 domain containing protein	-	-	2.0e-21	51%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	82%

Source	Gene names
Sma3	AT4g38500; At4g38500; F20M13.60; GSVIVT00036164001; Os06g0724300; OsI_24500; OsJ_22695; P0535F09.34; P0548E04.1; PHYPADRAFT_216814; POPTRDRAFT_557052; POPTRDRAFT_800871; RCOM_0977300; VITISV_038566;

Source	GOs	Term	Type	e value	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	0.0	-
Sma3	Protein of unknown function DUF616	IPR006852	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G38500.1	Protein of unknown function (DUF616) chr4:18008418-18010693 FORWARD LENGTH=499	7.0e-34	77%
RefSeq	Arabidopsis thaliana	NP_568044.1	uncharacterized protein [Arabidopsis thaliana]	9.0e-34	77%
RefSeq	Populus trichocarpa	XP_002312945.1	predicted protein [Populus trichocarpa]	6.99949e-42	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HR29

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 32 aas, your sequence is shorter than subject: 82 - 510

Fln protein: S*PWLSLMFCCLWFNEVNLLTPRDQLSFGYVVYRLNGSFPFFMFPNCEYNSLFILHKHTREHSSKIEWVKSTDEFKGNGSVM

Protein Length: 83

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTTGCTGCTTGTGGTTCAACGAGGTTAACCTGTTGACACCACGAGATCAGCTTAGTTTTGGCTATGTTGTATATAGGTTGAATGGATCATTTCCATTTTTTATGTTCCCCAACTGTGAATATAATTCATTATTCATCTTACATAAACACACCCGTGAGCACTCGTCTAAAATTGAATGGGTGAAGTCAACAGATGAGTTTAAAGGCAATGGCAGCGTAATG

Fln Alignment:

GG46A6U01BWYQI___LSLMFCCLWFNEVNLLTPRDQLSFGYVVYRLNGSFPFFMFPNCEYNSLFILHKHTREHSSKIEWVKSTDEFKGNGSVM
B9HR29_______________MSNLFSCLWFNEVNLFTPRDQLSFGYVVYRLGGAFKFFMFPNCEYNSLFVLHPHTREHSSKVEWVKSLSEFKGNGSSM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain