SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68817

Length: 179 nt

UniGene Fasta

>sp_v3.0_unigene68817
CGTCGTGACCTTGGCTGTCACTCATGTACAGTGCAGTTTAATTTTGGACCAGAATTTGATTGCTTTCCTGAGGACTTTGGCGATCGACCCCTGCCTAAGGCCATGTATGAGGCTTCTTATTGTGGAATTGATAGACAAGCAGTCCACCATGGAGAACTTCTTGTTGAAAGTGGTCAATC

Ace file of the UniGene sp_v3.0_unigene68817

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TRAUCO n=1 Tax=Pinus radiata RepID=B3V288_PINRA	-	-	1.0e-21	90%
FL-Next	tr=TRAUCO; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	90%
Sma3	TRAUCO	-	-	1.949e-06	-

Source	InterPros	Term	Type	Identity
Sma3	B30.2/SPRY domain	IPR001870	-	-
Sma3	SPla/RYanodine receptor SPRY	IPR003877	-	-
Sma3	SPla/RYanodine receptor subgroup	IPR018355	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002299899.1	predicted protein [Populus trichocarpa]	7.0e-11	55%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B3V288

Fln msg: STOP codon was not found. Distance to subject end: 5 aas, your sequence is shorter than subject: 59 - 412

Fln protein: RRDLGCHSCTVQFNFGPEFDCFPEDFGDRPLPKAMYEASYCGIDRQAVHHGELLVESGQ

Protein Length: 60

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTACAGTGCAGTTTAATTTTGGACCAGAATTTGATTGCTTTCCTGAGGACTTTGGCGATCGACCCCTGCCTAAGGCCATGTATGAGGCTTCTTATTGTGGAATTGATAGACAAGCAGTCCACCATGGAGAACTTCTTGTTGAAAGTGGTCAATC

Fln Alignment:

GG46A6U01BIEXN___SCTVQFNFGPEFDCFPEDFGDRPLPKAMYEASYCGIDRQAVHHGELLVESGQ
B3V288_______________NCQVQFNFGPEFDCFPEDFGNRPLPKAMSEASYCGIDRQAVNHGELLVESGQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain