SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68756

Length: 262 nt

UniGene Fasta

>sp_v3.0_unigene68756
CGTCGTGACCTTGACTGTCACTCATTCATCGATGAGCTGACTGGCTTTGAGGTCAATGTATTCCAGTTTCCGGAGCCCTTCGGATTCATATTCACATATTTTGCCGCTTTGCCTCTGATATTGGTTACGGCCCAAGTGGTAACCAAGGCCATAATAAATGATGTCCTAATCCTGAAGGGGCCGTGTCCGAATTGCGGCACTGAAAATCTTTCCTTCTACGGGACAATACTGTCGATCGAGAGCGGTGGAGCAACGAACAATG

Ace file of the UniGene sp_v3.0_unigene68756

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PGR5-like protein 1A [Arabidopsis thaliana] gb\|AEE84677.1\| PGR5-like protein 1A [Arabidopsis thaliana]	-	-	7.0e-24	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%

Source	Gene names
Sma3	At4g11960; At4g22890; F16J13.30; F7H19.70; GSVIVT00001064001; LOC_Os03g64020; OJ1014_E06.2; OJ1191_A10.128; OSJNBa0003M24.13; OSJNBa0059G06.17; Os03g0857400; Os08g0526300; OsI_14406; OsI_14407; OsI_29970; OsJ_13437; OsJ_28011; PGRL1A; PGRL1B; POPTRDRAFT_6

Source	GOs	Term	Type	Identity
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	photosynthetic electron transport in photosystem I	GO:0009773	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G22890.1	PGR5-LIKE A PGR5-LIKE A chr4:12007157-12009175 FORWARD LENGTH=324	6.0e-31	64%
RefSeq	Arabidopsis thaliana	NP_001078431.1	PGR5-like protein 1A [Arabidopsis thaliana]	8.0e-31	64%
RefSeq	Populus trichocarpa	XP_002303553.1	predicted protein [Populus trichocarpa]	1.0e-30	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWM0

Fln msg: Distance to subject end: 44 aas, your sequence is shorter than subject: 87 - 350

Fln protein: RRDLDCHSFIDELTGFEVNVFQFPEPFGFIFTYFAALPLILVTAQVVTKAIINDVLILKGPCPNCGTENLSFYGTILSIESGGATNN

Protein Length: 88

Fln nts: CGTCGTGACCTTGACTGTCACTCATTCATCGATGAGCTGACTGGCTTTGAGGTCAATGTATTCCAGTTTCCGGAGCCCTTCGGATTCATATTCACATATTTTGCCGCTTTGCCTCTGATATTGGTTACGGCCCAAGTGGTAACCAAGGCCATAATAAATGATGTCCTAATCCTGAAGGGGCCGTGTCCGAATTGCGGCACTGAAAATCTTTCCTTCTACGGGACAATACTGTCGATCGAGAGCGGTGGAGCAACGAACAATG

Fln Alignment:

GG46A6U01DYVFB___FIDELTGFEVN-VFQFPEPFGFIFTYFAALPLILVTAQVVTKAIINDVLILKGPCPNCGTENLSFYGTILSIESGGATN
A9NWM0_______________FLDDLTGFEITYLLELPEPYSFIFTWFIVLPATYLIARAITNAILKDFLILKGTCPNCGTENISFFGTILTVPSGGPLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain