SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68739

Length: 351 nt

UniGene Fasta

>sp_v3.0_unigene68739
CGTCGTGACCTTGGCTGTCACTCAAGCAAGCCTTGGCCAGTCAGATGAACGTACTTCCTGGGAAAGTTGAAGTTTGGTTCCAGAATAGACGAGGAAGGAGTAAGCTCAAGCAAAAGGAAATGGACTGCGAGGTTCTCAAAAGGTGCAACGAGTCACTTGCAGACGAGAACAGAAAACTGCACAAAGAACTGCAGGAATTGAGAGCTTTAAAATTCGCGTCTCCTCTCACCGTCTGCCCCTCCTGTGCAAAAGTTGCACCAGCCAGCAATCCTGGGGCTTTCACTTTAGCGAATGTGAAATCTGTCTTCACACAAGGCGTTTCTCCACACTGAATTGTCGGCTATGGAATCT

Ace file of the UniGene sp_v3.0_unigene68739

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	type II homeodomain-leucine zipper protein [Medicago sativa]	-	-	2.0e-23	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Homeobox-leucine zipper protein ATHB-4	-	-	1.033e-16	-

Source	Gene names
Sma3	24.t00025; 25.t00036; 31.t00070; 40.t00018; ATHB-17; ATHB-2; ATHB-4; ATHB-X; ATHB18; At1g70920; At2g01430; At2g22800; At2g44910; At3g60390; At4g16780; At4g17460; At4g37790; At5g06710; At5g47370; CPHB-3; Crhb10; Crhb2; Crhb3; EcHB1; F2I9.5; FCAALL.101; FCA

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	shade avoidance	GO:0009641	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	response to far red light	GO:0010218	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3	HD-ZIP protein, N-terminal	IPR006712	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G37790.1	HAT22 Homeobox-leucine zipper protein family chr4:17768241-17769272 FORWARD LENGTH=278	3.0e-28	59%
RefSeq	Arabidopsis thaliana	NP_195493.1	homeobox-leucine zipper protein HAT22 [Arabidopsis thaliana]	4.0e-28	59%
RefSeq	Populus trichocarpa	XP_002314223.1	predicted protein [Populus trichocarpa]	2.0e-32	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKN4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 110 - 309

Fln protein: S*PWLSLKQALASQMNVLPGKVEVWFQNRRGRSKLKQKEMDCEVLKRCNESLADENRKLHKELQELRALKFASPLTVCPSCAKVAPASNPGAFTLANVKSVFTQGVSPH*

Protein Length: 111

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCAAGCCTTGGCCAGTCAGATGAACGTACTTCCTGGGAAAGTTGAAGTTTGGTTCCAGAATAGACGAGGAAGGAGTAAGCTCAAGCAAAAGGAAATGGACTGCGAGGTTCTCAAAAGGTGCAACGAGTCACTTGCAGACGAGAACAGAAAACTGCACAAAGAACTGCAGGAATTGAGAGCTTTAAAATTCGCGTCTCCTCTCACCGTCTGCCCCTCCTGTGCAAAAGTTGCACCAGCCAGCAATCCTGGGGCTTTCACTTTAGCGAATGTGAAATCTGTCTTCACACAAGGCGTTTCTCCACACTGA___ATTGTCGGCTATGGAATCT

Fln Alignment:

GG46A6U01COCCX___KQALASQMNVLPGKVEVWFQNRRGRSKLKQKEMDCEVLKRCNESLADENRKLHKELQELRALKFASP---------LTVCPSCAKVAPASN--PGAFTLA
A9NKN4_______________KQALAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTDENRRLQKELQELRALKLASPLYMQMPAATLTMCPSCERVVPAENSRPPPFTLA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain