SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68727

Length: 218 nt

UniGene Fasta

>sp_v3.0_unigene68727
CGTCGTGACCTTGGCTGTCACTCAAGCTTCTCATAATTATACAAGAAGATACCGAATCTCAACTTCTGATTCCTTGCATTAGAACCATTGGGTGCCTTGCTCGGATCTTTCCTACTAAAGAAACCAGGCCAATTCCTGCCCTAGTGAAAAATCTGGATCACAAAGAATTATCTGTGTCCAGAGAGACAGCGATTGCTCTCACGAAGTTTGCCTGCACA

Ace file of the UniGene sp_v3.0_unigene68727

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	armadillo repeat only 2 protein [Arabidopsis thaliana] dbj\|BAB10425.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM97034.1\| putative protein [Arabidopsis thaliana] gb\|AAN15576.1\| putative protein [Arabidopsis thaliana] gb\|AED98176.1\| armadillo re	-	-	1.0e-10	63%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	61%

Source	Gene names
Sma3	At5g66200; GSVIVT00036776001; POPTRDRAFT_679130; POPTRDRAFT_856738; RCOM_0430440; VITISV_008543;

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Armadillo	IPR000225	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G66200.1	ARO2 armadillo repeat only 2 chr5:26453648-26455603 REVERSE LENGTH=651	1.0e-14	63%
RefSeq	Arabidopsis thaliana	NP_201421.1	armadillo repeat only 2 protein [Arabidopsis thaliana]	1.0e-14	63%
RefSeq	Populus trichocarpa	XP_002322193.1	predicted protein [Populus trichocarpa]	2.0e-14	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1J8L0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 107 aas, your sequence is shorter than subject: 72 - 655

Fln protein: S*PWLSLKLLIIIQEDTESQLLIPCIRTIGCLARIFPTKETRPIPALVKNLDHKELSVSRETAIALTKFACT

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCTTCTCATAATTATACAAGAAGATACCGAATCTCAACTTCTGATTCCTTGCATTAGAACCATTGGGTGCCTTGCTCGGATCTTTCCTACTAAAGAAACCAGGCCAATTCCTGCCCTAGTGAAAAATCTGGATCACAAAGAATTATCTGTGTCCAGAGAGACAGCGATTGCTCTCACGAAGTTTGCCTGCACA

Fln Alignment:

GG46A6U01C485Y___LIIIQEDTESQLLIPCIRTIGCLARIFPTKETRPIPALVKNLDHKELSVSRETAIALTKFACT
I1J8L0_______________VVKIIEKADSELLIPCIKTIGNLARTFKATETRMIGPLVKLLDEREAEVSREASIALTKFACT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain