SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene68723

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene68723
CGTCGTGACCTTGGCTGTCACTCAAGTCTTGTGAAATTTATGACCAGTGGTCCCGTTCTTGCAATGGTACTTGAGAAAGAGGATGCCGTTGCTCAGTGGCGTGCATTGATTGGGCCAACTGATGCGAAAAAAGCGAAGATATCACACCCAAAAAGCATTAGAGCAATGTGTGGATCTGACTCGCAAAACAATTGCGTCCATGGCTCTGATTCACATCAATCTGCTGCTCGAGAG

Ace file of the UniGene sp_v3.0_unigene68723

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleoside diphosphate kinase n=1 Tax=Sorghum bicolor RepID=C5XV08_SORBI	-	-	3.0e-26	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Nucleoside diphosphate kinase	-	-	6.792e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Nucleoside-diphosphate kinase.	EC:2.7.4.6	-	1.96e-14	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	1.96e-14	%
Sma3	Pyrimidine metabolism	00240	1.96e-14	%
Sma3	Metabolic pathways	01100	1.96e-14	%
Sma3	Biosynthesis of secondary metabolites	01110	1.96e-14	%

Source	Gene names
Sma3	CHLREDRAFT_139197; F28G4.12; GSVIVT00034055001; Os02g0565100; OsI_07703; OsJ_07176; P0020C11.23; POPTRDRAFT_712245; RCOM_0391820; RSP23; VITISV_043696;

Source	GOs	Term	Type	Identity
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	nucleoside diphosphate kinase activity	GO:0004550	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	GTP biosynthetic process	GO:0006183	Biological Process	-
Sma3	UTP biosynthetic process	GO:0006228	Biological Process	-
Sma3	CTP biosynthetic process	GO:0006241	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Nucleoside diphosphate kinase	IPR001564	-	-
Sma3	Dpy-30 motif	IPR007858	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G17410.1	Nucleoside diphosphate kinase family protein chr1:5968627-5969780 REVERSE LENGTH=181	8.0e-31	75%
RefSeq	Arabidopsis thaliana	NP_001185021.1	nucleoside diphosphate kinase-like protein [Arabidopsis thaliana]	4.0e-31	75%
RefSeq	Populus trichocarpa	XP_002304122.1	predicted protein [Populus trichocarpa]	7.0e-33	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AEA5

Fln msg: Distance to subject end: 20 aas, your sequence is shorter than subject: 78 - 177

Fln protein: RRDLGCHSSLVKFMTSGPVLAMVLEKEDAVAQWRALIGPTDAKKAKISHPKSIRAMCGSDSQNNCVHGSDSHQSAARE

Protein Length: 79

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTCTTGTGAAATTTATGACCAGTGGTCCCGTTCTTGCAATGGTACTTGAGAAAGAGGATGCCGTTGCTCAGTGGCGTGCATTGATTGGGCCAACTGATGCGAAAAAAGCGAAGATATCACACCCAAAAAGCATTAGAGCAATGTGTGGATCTGACTCGCAAAACAATTGCGTCCATGGCTCTGATTCACATCAATCTGCTGCTCGAGAG

Fln Alignment:

GG46A6U01CQ0BS___SLVKFMTSGPVLAMVLEKEDAVAQWRALIGPTDAKKAKISHPKSIRAMCGSDSQNNCVHGSDSHQSAARE
D5AEA5_______________SLVKFMTSGPVLAMVLEKENAVAQWRALIGPTDATKARISHPKSIRAMCGSDSQNNCVHGSDSHQSAARE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain