UniGene Name: sp_v3.0_unigene68710
Length: 147 nt
UniGene Fasta |
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>sp_v3.0_unigene68710
C |
Ace file of the UniGene sp_v3.0_unigene68710 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | AINTEGUMENTA-like protein n=1 Tax=Pinus thunbergii RepID=Q76H96_PINTH | - | - | 6.0e-12 | 86% |
FL-Next | tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). | - | - | 0.0 | 81% |
Sma3 | AP2 domain-containing transcription factor | - | - | 1.195e-35 | - |
Source | ECs | Term | Type | e value | Identity |
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Sma3 | 2-alkenal reductase. | EC:1.3.1.74 | - | 1.584e-06 | - |
Source | Gene names |
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Sma3 | 117M18_31; AIL1; AIL3; AIL4; AIL5; AIL6; AIL7; ANT; AP2D14; AP2D16; AP2D17; At1g51190; At1g72570; At3g20840; At4g37750; At5g10510; At5g17430; At5g57390; At5g65510; BBM; BBM1; BBM2; BNM3; CKC1; CrANTL1; DRG; F11M15.6; F12B17.140; F28P22.24; GSVIVT000118150 |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | sequence-specific DNA binding transcription factor activity | GO:0003700 | Molecular Function | 0.0 | - |
Sma3 | regulation of transcription, DNA-dependent | GO:0006355 | Biological Process | 0.0 | - |
Sma3 | response to stress | GO:0006950 | Biological Process | 0.0 | - |
Sma3 | multicellular organismal development | GO:0007275 | Biological Process | 0.0 | - |
Sma3 | pattern specification process | GO:0007389 | Biological Process | 0.0 | - |
Sma3 | auxin mediated signaling pathway | GO:0009734 | Biological Process | 0.0 | - |
Sma3 | seed germination | GO:0009845 | Biological Process | 0.0 | - |
Sma3 | ethylene mediated signaling pathway | GO:0009873 | Biological Process | 0.0 | - |
Sma3 | flower development | GO:0009908 | Biological Process | 0.0 | - |
Sma3 | stem cell maintenance | GO:0019827 | Biological Process | 0.0 | - |
Sma3 | cell differentiation | GO:0030154 | Biological Process | 0.0 | - |
Sma3 | regulation of cell proliferation | GO:0042127 | Biological Process | 0.0 | - |
Sma3 | root development | GO:0048364 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | IPR000173 | - | 0.0 | - | |
Sma3 | AP2/ERF domain | IPR001471 | - | 0.0 | - |
Sma3 | DNA topoisomerase, type IIA, conserved site | IPR018522 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT5G17430.1 | BBM Integrase-type DNA-binding superfamily protein chr5:5742542-5745568 REVERSE LENGTH=584 | 3.0e-14 | 90% |
RefSeq | Arabidopsis thaliana | NP_197245.2 | AP2-like ethylene-responsive transcription factor BBM [Arabidopsis thaliana] | 4.0e-14 | 90% |
RefSeq | Populus trichocarpa | XP_002316179.1 | AP2 domain-containing transcription factor [Populus trichocarpa] | 4.0e-14 | 90% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: Q76H96
Fln msg: Overlapping hits, possible frame ERROR between 71 and 56, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 314 aas, your sequence is shorter than subject: 48 - 606
Fln protein:
S
Protein Length:
49
Fln nts:
C
Fln Alignment:
GG46A6U01EXCV3___NMTRQEYVASLxxxxxGFSRGASIYRGVTRHHQHGRWQARI
Q76H96_______________NMTRQEYVANLxxxxxGFSRGASVYRGVTRHHQHGRWQARI
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain